version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3118 46.35 -1 3521910..3522485 + 191 74313736 yrbK SSON_3347 - hypothetical protein 3119 49.64 0 3522454..3523011 + 185 74313737 yhbN SSON_3348 - hypothetical protein 3120 54.41 0 3523018..3523743 + 241 74313738 yhbG SSON_3349 - putative ABC transporter ATP-binding protein YhbG 3121 52.79 0 3523791..3525224 + 477 74313739 rpoN SSON_3350 - RNA polymerase factor sigma-54 3122 44.79 -1 3525247..3525534 + 95 74313740 yhbH SSON_3351 - putative sigma(54) modulation protein 3123 52.03 0 3525652..3526143 + 163 74313741 ptsN SSON_3352 - sugar-specific enzyme IIA component of PTS 3124 52.16 0 3526189..3527043 + 284 74313742 yhbJ SSON_3353 - hypothetical protein 3125 50.18 0 3527040..3527312 + 90 74313743 ptsO SSON_3354 - phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3126 51.03 0 3527526..3528158 + 210 74313744 yrbL SSON_3355 - hypothetical protein 3127 51.58 0 3528155..3528883 - 242 74313745 mtgA SSON_3356 - monofunctional biosynthetic peptidoglycan transglycosylase 3128 52.64 0 3528880..3529542 - 220 74313746 yhbL SSON_3357 - isoprenoid biosynthesis protein 3129 50.41 0 3529763..3532099 - 778 74313747 arcB SSON_3358 - aerobic respiration control sensor protein ArcB 3130 56.13 +1 3532195..3533124 - 309 74313748 yhcC SSON_3359 - hypothetical protein 3131 57.03 +1 3533706..3538259 + 1517 74313749 gltB SSON_3360 - glutamate synthase subunit alpha 3132 55.74 0 3538272..3539690 + 472 74313750 gltD SSON_3361 - glutamate synthase subunit beta 3133 48.60 0 3540751..3541215 - 154 74313751 yhcH SSON_3362 - hypothetical protein 3134 57.88 +1 3541212..3542087 - 291 161986439 yhcI SSON_3363 - N-acetylmannosamine kinase 3135 57.68 +1 3542084..3542773 - 229 74313753 yhcJ SSON_3364 - N-acetylmannosamine-6-phosphate 2-epimerase 3136 55.06 0 3542821..3544311 - 496 161986438 nanT SSON_3365 - putative sialic acid transporter 3137 52.01 0 3544421..3545314 - 297 74313755 nanA SSON_3366 - N-acetylneuraminate lyase 3138 52.53 0 3545436..3546227 - 263 74313756 yhcK SSON_3367 - transcriptional regulator NanR 3139 50.87 0 3546607..3547929 + 440 74313757 yhcL SSON_3368 - putative cryptic C4-dicarboxylate transporter DcuD 3140 55.02 0 3547972..3548469 - 165 74313758 sspB SSON_3369 - ClpXP protease specificity-enhancing factor 3141 53.68 0 3548475..3549113 - 212 74313759 sspA SSON_3370 - stringent starvation protein A 3142 52.16 0 3549508..3549900 - 130 74313760 rpsI SSON_3371 - 30S ribosomal protein S9 3143 50.12 0 3549916..3550344 - 142 74313761 rplM SSON_3372 - 50S ribosomal protein L13 3144 52.04 0 3550563..3551690 - 375 74313762 yhcM SSON_3373 - hypothetical protein 3145 54.07 0 3551878..3552282 + 134 74313763 yhcB SSON_3374 - cytochrome d ubiquinol oxidase subunit III 3146 52.19 0 3552436..3553803 + 455 74313764 degQ SSON_3375 - serine endoprotease 3147 52.90 0 3553893..3554960 + 355 74313765 degS SSON_3376 - serine endoprotease 3148 53.90 0 3555011..3556357 - 448 74313766 - SSON_3377 - IS4 orf 3149 51.86 0 3556461..3557399 - 312 74313767 mdh SSON_3378 - malate dehydrogenase 3150 48.83 0 3557834..3558304 + 156 74313768 argR SSON_3379 - arginine repressor 3151 46.67 -1 3558618..3558932 + 104 74313769 yhcN SSON_3380 - hypothetical protein 3152 42.49 -2 3558988..3559260 - 90 74313770 yhcO SSON_3381 - hypothetical protein 3153 52.54 0 3559352..3561319 - 655 74313771 yhcP SSON_3382 - p-hydroxybenzoic acid efflux subunit AaeB 3154 53.48 0 3561325..3562257 - 310 74313772 yhcQ SSON_3383 - p-hydroxybenzoic acid efflux subunit AaeA 3155 47.06 -1 3562265..3562468 - 67 161986437 yhcR SSON_3384 - hypothetical protein 3156 54.84 0 3563644..3565089 - 481 74313774 tldD SSON_3386 - protease TldD 3157 53.41 0 3565245..3569045 - 1266 74313775 yhdRP SSON_3387 - hypothetical protein 3158 52.31 0 3569113..3570582 - 489 161986436 cafA SSON_3388 - ribonuclease G 3159 53.70 0 3570572..3571165 - 197 74313777 yhdE SSON_3389 - Maf-like protein 3160 50.92 0 3571174..3571662 - 162 74313778 mreD SSON_3390 - rod shape-determining protein MreD 3161 55.98 +1 3571662..3572765 - 367 74313779 mreC SSON_3391 - cell wall structural complex MreBCD transmembrane component MreC 3162 53.89 0 3572831..3573934 - 367 74313780 mreB SSON_3392 - regulator of ftsI 3163 50.49 0 3574179..3576119 - 646 74313781 yhdA SSON_3393 - regulatory protein CsrD 3164 55.28 0 3576271..3577245 + 324 74313782 yhdH SSON_3394 - putative dehydrogenase 3165 47.06 -1 3577303..3577404 - 33 74313783 - SSON_3395 - hypothetical protein 3166 51.80 0 3578223..3578693 + 156 74313784 accB SSON_3396 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3167 53.41 0 3578704..3580053 + 449 74313785 accC SSON_3397 - acetyl-CoA carboxylase biotin carboxylase subunit 3168 54.32 0 3580162..3580404 + 80 74313786 yhdT SSON_3398 - hypothetical protein 3169 54.48 0 3580394..3581845 + 483 161986435 panF SSON_3399 - sodium/panthothenate symporter 3170 54.31 0 3581857..3582738 + 293 74313788 prmA SSON_3400 - ribosomal protein L11 methyltransferase 3171 52.28 0 3583067..3584032 + 321 74313789 yhdG SSON_3401 - tRNA-dihydrouridine synthase B 3172 47.14 -1 3584058..3584354 + 98 74313790 fis SSON_3402 - DNA-binding protein Fis 3173 47.57 0 3584440..3585324 + 294 161986434 yhdJ SSON_3403 - putative methyltransferase 3174 39.44 -2 3585408..3585587 + 59 74313792 yhdU SSON_3404 - hypothetical protein 3175 44.04 -1 3585590..3586252 - 220 74313793 envR SSON_3405 - DNA-binding transcriptional regulator EnvR 3176 52.33 0 3586651..3587808 + 385 74313794 acrE SSON_3406 - AcrE 3177 54.37 0 3591150..3591653 + 167 74313795 - SSON_3408 - IS1 ORF 3178 50.00 0 3592110..3593027 + 305 74313796 yhdW SSON_3409 - putative periplasmic binding transport protein 3179 51.85 0 3594283..3595389 + 368 74313797 yhdY SSON_3411 - putative transport system permease protein 3180 47.04 -1 3595397..3596155 + 252 74313798 yhdZ SSON_3412 - putative ATP-binding component of a transport system 3181 45.78 -1 3601820..3602590 + 256 74313799 yrdA SSON_3420 - putative transferase 3182 48.06 0 3602566..3602823 - 85 74313800 yrdB SSON_3421 - hypothetical protein 3183 48.96 0 3602820..3603638 - 272 74313801 aroE SSON_3422 - shikimate 5-dehydrogenase 3184 52.71 0 3603643..3604215 - 190 74313802 yrdC SSON_3423 - putative ribosome maturation factor 3185 46.41 -1 3604791..3605264 - 157 74313803 smg SSON_3425 - hypothetical protein 3186 51.11 0 3605236..3606360 - 374 74313804 smf SSON_3426 - hypothetical protein 3187 46.67 -1 3606490..3606999 + 169 74313805 def SSON_3427 - peptide deformylase 3188 53.16 0 3607014..3607961 + 315 74313806 fmt SSON_3428 - methionyl-tRNA formyltransferase 3189 50.00 0 3608007..3609296 + 429 74313807 sun SSON_3429 - 16S rRNA methyltransferase B 3190 49.96 0 3609318..3610694 + 458 74313808 trkA SSON_3430 - potassium transporter peripheral membrane component 3191 45.26 -1 3610824..3611234 + 136 74313809 mscL SSON_3431 - large-conductance mechanosensitive channel 3192 42.92 -2 3611231..3611449 - 72 74313810 yhdL SSON_3432 - hypothetical protein 3193 50.00 0 3611505..3611930 - 141 74313811 zntR SSON_3433 - zinc-responsive transcriptional regulator 3194 47.97 0 3611941..3612309 - 122 74313812 yhdN SSON_3434 - hypothetical protein 3195 53.39 0 3612416..3612799 - 127 74313813 rplQ SSON_3435 - 50S ribosomal protein L17 3196 52.22 0 3612840..3613829 - 329 74313814 rpoA SSON_3436 - DNA-directed RNA polymerase subunit alpha 3197 50.72 0 3613855..3614475 - 206 74313815 rpsD SSON_3437 - 30S ribosomal protein S4 3198 51.54 0 3614509..3614898 - 129 74313816 rpsK SSON_3438 - 30S ribosomal protein S11 3199 51.82 0 3614915..3615271 - 118 74313817 rpsM SSON_3439 - 30S ribosomal protein S13 3200 47.86 0 3615418..3615534 - 38 74313818 rpmJ SSON_3440 - 50S ribosomal protein L36 3201 49.32 0 3615566..3616897 - 443 74313819 secY SSON_3441 - preprotein translocase subunit SecY 3202 53.79 0 3616905..3617339 - 144 74313820 rplO SSON_3442 - 50S ribosomal protein L15 3203 50.00 0 3617343..3617522 - 59 74313821 rpmD SSON_3443 - 50S ribosomal protein L30 3204 50.00 0 3617526..3618029 - 167 74313822 rpsE SSON_3444 - 30S ribosomal protein S5 3205 53.39 0 3618044..3618397 - 117 74313823 rplR SSON_3445 - 50S ribosomal protein L18 3206 51.87 0 3618407..3618940 - 177 74313824 rplF SSON_3446 - 50S ribosomal protein L6 3207 50.13 0 3618953..3619345 - 130 74313825 rpsH SSON_3447 - 30S ribosomal protein S8 3208 52.94 0 3619379..3619684 - 101 74313826 rpsN SSON_3448 - 30S ribosomal protein S14 3209 49.63 0 3619699..3620238 - 179 74313827 rplE SSON_3449 - 50S ribosomal protein L5 3210 46.35 -1 3620253..3620567 - 104 74313828 rplX SSON_3450 - 50S ribosomal protein L24 3211 51.08 0 3620578..3620949 - 123 74313829 rplN SSON_3451 - 50S ribosomal protein L14 3212 47.45 -1 3621112..3621366 - 84 74313830 rpsQ SSON_3452 - 30S ribosomal protein S17 3213 54.17 0 3621366..3621557 - 63 74313831 rpmC SSON_3453 - 50S ribosomal protein L29 3214 51.82 0 3621557..3621967 - 136 74313832 rplP SSON_3454 - 50S ribosomal protein L16 3215 50.71 0 3621980..3622681 - 233 74313833 rpsC SSON_3455 - 30S ribosomal protein S3 3216 49.85 0 3622699..3623031 - 110 74313834 rplV SSON_3456 - 50S ribosomal protein L22 3217 49.46 0 3623046..3623324 - 92 74313835 rpsS SSON_3457 - 30S ribosomal subunit protein S19 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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