IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3114	 54.57	0	3518330..3519139	-	269	74313732	yrbF	SSON_3343	-	putative ABC transporter ATP-binding protein YrbF
3115	 51.94	0	3519349..3520326	+	325	74313733	yrbG	SSON_3344	-	putative calcium/sodium:proton antiporter
3116	 52.38	0	3520340..3521326	+	328	74313734	yrbH	SSON_3345	-	D-arabinose 5-phosphate isomerase
3117	 52.56	0	3521347..3521913	+	188	74313735	yrbI	SSON_3346	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
3118	 46.35	-1	3521910..3522485	+	191	74313736	yrbK	SSON_3347	-	hypothetical protein
3119	 49.64	0	3522454..3523011	+	185	74313737	yhbN	SSON_3348	-	hypothetical protein
3120	 54.41	0	3523018..3523743	+	241	74313738	yhbG	SSON_3349	-	putative ABC transporter ATP-binding protein YhbG
3121	 52.79	0	3523791..3525224	+	477	74313739	rpoN	SSON_3350	-	RNA polymerase factor sigma-54
3122	 44.79	-1	3525247..3525534	+	95	74313740	yhbH	SSON_3351	-	putative sigma(54) modulation protein
3123	 52.03	0	3525652..3526143	+	163	74313741	ptsN	SSON_3352	-	sugar-specific enzyme IIA component of PTS
3124	 52.16	0	3526189..3527043	+	284	74313742	yhbJ	SSON_3353	-	hypothetical protein
3125	 50.18	0	3527040..3527312	+	90	74313743	ptsO	SSON_3354	-	phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)
3126	 51.03	0	3527526..3528158	+	210	74313744	yrbL	SSON_3355	-	hypothetical protein
3127	 51.58	0	3528155..3528883	-	242	74313745	mtgA	SSON_3356	-	monofunctional biosynthetic peptidoglycan transglycosylase
3128	 52.64	0	3528880..3529542	-	220