IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3097	 53.44	0	3504074..3506008	-	644	74313715	hflB	SSON_3326	-	ATP-dependent metalloprotease
3098	 50.48	0	3506108..3506737	-	209	74313716	rrmJ	SSON_3327	-	23S rRNA methyltransferase J
3099	 48.64	0	3506863..3507156	+	97	74313717	yhbY	SSON_3328	-	RNA-binding protein YhbY
3100	 48.43	0	3507312..3507788	-	158	161986440	greA	SSON_3329	-	transcription elongation factor GreA
3101	 52.79	0	3508036..3509469	+	477	74313719	dacB	SSON_3330	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
3102	 52.77	0	3509655..3510827	-	390	74313720	obgE	SSON_3331	-	GTPase ObgE
3103	 52.80	0	3510843..3511808	-	321	74313721	yhbE	SSON_3332	-	hypothetical protein
3104	 50.00	0	3511935..3512192	-	85	74313722	rpmA	SSON_3333	-	50S ribosomal protein L27
3105	 48.40	0	3512213..3512524	-	103	74313723	rplU	SSON_3334	-	50S ribosomal protein L21
3106	 52.47	0	3512783..3513754	+	323	74313724	ispB	SSON_3335	-	octaprenyl diphosphate synthase
3107	 50.54	0	3513983..3514261	+	92	74313725	nlp	SSON_3336	-	DNA-binding transcriptional regulator Nlp
3108	 53.33	0	3514309..3515568	-	419	74313726	murA	SSON_3337	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3109	 50.37	0	3515623..3515892	-	89	74313727	yrbA	SSON_3338	-	hypothetical protein
3110	 52.05	0	3516037..3516426	-	129	74313728	yrbB	SSON_3339	-	hypothetical protein
3111	 52.20	0	3516330..3516965	-	211	74313729	yrbC	SSON_3340	-	hypothetical protein
3112	 49.82	0	3516984..3517535	-	183