IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3089	 48.57	0	3494492..3494944	-	150	161986442	yhbC	SSON_3316	-	hypothetical protein
3090	 53.03	0	3495533..3496705	+	390	74313708	-	SSON_3318	-	IS21 ORF1
3091	 52.63	0	3496705..3497502	+	265	74313709	-	SSON_3319	-	IS21 ORF2
3092	 52.01	0	3497709..3499052	+	447	74313710	argG	SSON_3320	-	argininosuccinate synthase
3093	 42.91	-2	3499060..3500667	-	535	74313711	yhbX	SSON_3321	-	putative alkaline phosphatase I
3094	 49.85	0	3501246..3501578	-	110	74313712	secG	SSON_3323	-	preprotein translocase subunit SecG
3095	 53.96	0	3501806..3503143	-	445	74313713	glmM	SSON_3324	-	phosphoglucosamine mutase
3096	 51.59	0	3503136..3503984	-	282	161986441	folP	SSON_3325	-	dihydropteroate synthase
3097	 53.44	0	3504074..3506008	-	644	74313715	hflB	SSON_3326	-	ATP-dependent metalloprotease
3098	 50.48	0	3506108..3506737	-	209	74313716	rrmJ	SSON_3327	-	23S rRNA methyltransferase J
3099	 48.64	0	3506863..3507156	+	97	74313717	yhbY	SSON_3328	-	RNA-binding protein YhbY
3100	 48.43	0	3507312..3507788	-	158	161986440	greA	SSON_3329	-	transcription elongation factor GreA
3101	 52.79	0	3508036..3509469	+	477	74313719	dacB	SSON_3330	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
3102	 52.77	0	3509655..3510827	-	390	74313720	obgE	SSON_3331	-	GTPase ObgE
3103	 52.80	0	3510843..3511808	-	321	74313721	yhbE	SSON_3332	-	hypothetical protein
3104	 50.00	0	3511935..3512192	-	85