IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3077	 57.43	+1	3478298..3479293	+	331	74313695	yhbU	SSON_3304	-	putative collagenase
3078	 56.19	+1	3479284..3480180	+	298	74313696	yhbV	SSON_3305	-	hypothetical protein
3079	 55.95	+1	3480386..3481393	+	335	74313697	yhbW	SSON_3306	-	hypothetical protein
3080	 53.09	0	3481511..3482755	-	414	74313698	mtr	SSON_3307	-	tryptophan permease
3081	 55.61	0	3482909..3484798	-	629	161986443	deaD	SSON_3308	-	ATP-dependent RNA helicase DeaD
3082	 48.25	0	3484978..3485862	-	294	74313700	yhbM	SSON_3309	-	lipoprotein NlpI
3083	 53.38	0	3485971..3488175	-	734	74313701	pnp	SSON_3310	-	polynucleotide phosphorylase/polyadenylase
3084	 51.85	0	3488353..3488622	-	89	74313702	rpsO	SSON_3311	-	30S ribosomal protein S15
3085	 52.38	0	3488771..3489715	-	314	74313703	truB	SSON_3312	-	tRNA pseudouridine synthase B
3086	 52.99	0	3489715..3490116	-	133	74313704	rbfA	SSON_3313	-	ribosome-binding factor A
3087	 53.46	0	3490280..3492952	-	890	74313705	infB	SSON_3314	-	translation initiation factor IF-2
3088	 52.82	0	3492977..3494464	-	495	74313706	nusA	SSON_3315	-	transcription elongation factor NusA
3089	 48.57	0	3494492..3494944	-	150	161986442	yhbC	SSON_3316	-	hypothetical protein
3090	 53.03	0	3495533..3496705	+	390	74313708	-	SSON_3318	-	IS21 ORF1
3091	 52.63	0	3496705..3497502	+	265	74313709	-	SSON_3319	-	IS21 ORF2
3092	 52.01	0	3497709..3499052	+	447