version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3077 57.43 +1 3478298..3479293 + 331 74313695 yhbU SSON_3304 - putative collagenase 3078 56.19 +1 3479284..3480180 + 298 74313696 yhbV SSON_3305 - hypothetical protein 3079 55.95 +1 3480386..3481393 + 335 74313697 yhbW SSON_3306 - hypothetical protein 3080 53.09 0 3481511..3482755 - 414 74313698 mtr SSON_3307 - tryptophan permease 3081 55.61 0 3482909..3484798 - 629 161986443 deaD SSON_3308 - ATP-dependent RNA helicase DeaD 3082 48.25 0 3484978..3485862 - 294 74313700 yhbM SSON_3309 - lipoprotein NlpI 3083 53.38 0 3485971..3488175 - 734 74313701 pnp SSON_3310 - polynucleotide phosphorylase/polyadenylase 3084 51.85 0 3488353..3488622 - 89 74313702 rpsO SSON_3311 - 30S ribosomal protein S15 3085 52.38 0 3488771..3489715 - 314 74313703 truB SSON_3312 - tRNA pseudouridine synthase B 3086 52.99 0 3489715..3490116 - 133 74313704 rbfA SSON_3313 - ribosome-binding factor A 3087 53.46 0 3490280..3492952 - 890 74313705 infB SSON_3314 - translation initiation factor IF-2 3088 52.82 0 3492977..3494464 - 495 74313706 nusA SSON_3315 - transcription elongation factor NusA 3089 48.57 0 3494492..3494944 - 150 161986442 yhbC SSON_3316 - hypothetical protein 3090 53.03 0 3495533..3496705 + 390 74313708 - SSON_3318 - IS21 ORF1 3091 52.63 0 3496705..3497502 + 265 74313709 - SSON_3319 - IS21 ORF2 3092 52.01 0 3497709..3499052 + 447 74313710 argG SSON_3320 - argininosuccinate synthase 3093 42.91 -2 3499060..3500667 - 535 74313711 yhbX SSON_3321 - putative alkaline phosphatase I 3094 49.85 0 3501246..3501578 - 110 74313712 secG SSON_3323 - preprotein translocase subunit SecG 3095 53.96 0 3501806..3503143 - 445 74313713 glmM SSON_3324 - phosphoglucosamine mutase 3096 51.59 0 3503136..3503984 - 282 161986441 folP SSON_3325 - dihydropteroate synthase 3097 53.44 0 3504074..3506008 - 644 74313715 hflB SSON_3326 - ATP-dependent metalloprotease 3098 50.48 0 3506108..3506737 - 209 74313716 rrmJ SSON_3327 - 23S rRNA methyltransferase J 3099 48.64 0 3506863..3507156 + 97 74313717 yhbY SSON_3328 - RNA-binding protein YhbY 3100 48.43 0 3507312..3507788 - 158 161986440 greA SSON_3329 - transcription elongation factor GreA 3101 52.79 0 3508036..3509469 + 477 74313719 dacB SSON_3330 - D-alanyl-D-alanine carboxypeptidase/endopeptidase 3102 52.77 0 3509655..3510827 - 390 74313720 obgE SSON_3331 - GTPase ObgE 3103 52.80 0 3510843..3511808 - 321 74313721 yhbE SSON_3332 - hypothetical protein 3104 50.00 0 3511935..3512192 - 85 74313722 rpmA SSON_3333 - 50S ribosomal protein L27 3105 48.40 0 3512213..3512524 - 103 74313723 rplU SSON_3334 - 50S ribosomal protein L21 3106 52.47 0 3512783..3513754 + 323 74313724 ispB SSON_3335 - octaprenyl diphosphate synthase 3107 50.54 0 3513983..3514261 + 92 74313725 nlp SSON_3336 - DNA-binding transcriptional regulator Nlp 3108 53.33 0 3514309..3515568 - 419 74313726 murA SSON_3337 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3109 50.37 0 3515623..3515892 - 89 74313727 yrbA SSON_3338 - hypothetical protein 3110 52.05 0 3516037..3516426 - 129 74313728 yrbB SSON_3339 - hypothetical protein 3111 52.20 0 3516330..3516965 - 211 74313729 yrbC SSON_3340 - hypothetical protein 3112 49.82 0 3516984..3517535 - 183 74313730 yrbD SSON_3341 - hypothetical protein 3113 55.04 0 3517540..3518322 - 260 74313731 yrbE SSON_3342 - hypothetical protein 3114 54.57 0 3518330..3519139 - 269 74313732 yrbF SSON_3343 - putative ABC transporter ATP-binding protein YrbF 3115 51.94 0 3519349..3520326 + 325 74313733 yrbG SSON_3344 - putative calcium/sodium:proton antiporter 3116 52.38 0 3520340..3521326 + 328 74313734 yrbH SSON_3345 - D-arabinose 5-phosphate isomerase 3117 52.56 0 3521347..3521913 + 188 74313735 yrbI SSON_3346 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3118 46.35 -1 3521910..3522485 + 191 74313736 yrbK SSON_3347 - hypothetical protein 3119 49.64 0 3522454..3523011 + 185 74313737 yhbN SSON_3348 - hypothetical protein 3120 54.41 0 3523018..3523743 + 241 74313738 yhbG SSON_3349 - putative ABC transporter ATP-binding protein YhbG 3121 52.79 0 3523791..3525224 + 477 74313739 rpoN SSON_3350 - RNA polymerase factor sigma-54 3122 44.79 -1 3525247..3525534 + 95 74313740 yhbH SSON_3351 - putative sigma(54) modulation protein 3123 52.03 0 3525652..3526143 + 163 74313741 ptsN SSON_3352 - sugar-specific enzyme IIA component of PTS 3124 52.16 0 3526189..3527043 + 284 74313742 yhbJ SSON_3353 - hypothetical protein 3125 50.18 0 3527040..3527312 + 90 74313743 ptsO SSON_3354 - phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3126 51.03 0 3527526..3528158 + 210 74313744 yrbL SSON_3355 - hypothetical protein 3127 51.58 0 3528155..3528883 - 242 74313745 mtgA SSON_3356 - monofunctional biosynthetic peptidoglycan transglycosylase 3128 52.64 0 3528880..3529542 - 220 74313746 yhbL SSON_3357 - isoprenoid biosynthesis protein 3129 50.41 0 3529763..3532099 - 778 74313747 arcB SSON_3358 - aerobic respiration control sensor protein ArcB 3130 56.13 +1 3532195..3533124 - 309 74313748 yhcC SSON_3359 - hypothetical protein 3131 57.03 +1 3533706..3538259 + 1517 74313749 gltB SSON_3360 - glutamate synthase subunit alpha 3132 55.74 0 3538272..3539690 + 472 74313750 gltD SSON_3361 - glutamate synthase subunit beta 3133 48.60 0 3540751..3541215 - 154 74313751 yhcH SSON_3362 - hypothetical protein 3134 57.88 +1 3541212..3542087 - 291 161986439 yhcI SSON_3363 - N-acetylmannosamine kinase 3135 57.68 +1 3542084..3542773 - 229 74313753 yhcJ SSON_3364 - N-acetylmannosamine-6-phosphate 2-epimerase 3136 55.06 0 3542821..3544311 - 496 161986438 nanT SSON_3365 - putative sialic acid transporter 3137 52.01 0 3544421..3545314 - 297 74313755 nanA SSON_3366 - N-acetylneuraminate lyase 3138 52.53 0 3545436..3546227 - 263 74313756 yhcK SSON_3367 - transcriptional regulator NanR 3139 50.87 0 3546607..3547929 + 440 74313757 yhcL SSON_3368 - putative cryptic C4-dicarboxylate transporter DcuD 3140 55.02 0 3547972..3548469 - 165 74313758 sspB SSON_3369 - ClpXP protease specificity-enhancing factor 3141 53.68 0 3548475..3549113 - 212 74313759 sspA SSON_3370 - stringent starvation protein A 3142 52.16 0 3549508..3549900 - 130 74313760 rpsI SSON_3371 - 30S ribosomal protein S9 3143 50.12 0 3549916..3550344 - 142 74313761 rplM SSON_3372 - 50S ribosomal protein L13 3144 52.04 0 3550563..3551690 - 375 74313762 yhcM SSON_3373 - hypothetical protein 3145 54.07 0 3551878..3552282 + 134 74313763 yhcB SSON_3374 - cytochrome d ubiquinol oxidase subunit III 3146 52.19 0 3552436..3553803 + 455 74313764 degQ SSON_3375 - serine endoprotease 3147 52.90 0 3553893..3554960 + 355 74313765 degS SSON_3376 - serine endoprotease 3148 53.90 0 3555011..3556357 - 448 74313766 - SSON_3377 - IS4 orf 3149 51.86 0 3556461..3557399 - 312 74313767 mdh SSON_3378 - malate dehydrogenase 3150 48.83 0 3557834..3558304 + 156 74313768 argR SSON_3379 - arginine repressor 3151 46.67 -1 3558618..3558932 + 104 74313769 yhcN SSON_3380 - hypothetical protein 3152 42.49 -2 3558988..3559260 - 90 74313770 yhcO SSON_3381 - hypothetical protein 3153 52.54 0 3559352..3561319 - 655 74313771 yhcP SSON_3382 - p-hydroxybenzoic acid efflux subunit AaeB 3154 53.48 0 3561325..3562257 - 310 74313772 yhcQ SSON_3383 - p-hydroxybenzoic acid efflux subunit AaeA 3155 47.06 -1 3562265..3562468 - 67 161986437 yhcR SSON_3384 - hypothetical protein 3156 54.84 0 3563644..3565089 - 481 74313774 tldD SSON_3386 - protease TldD 3157 53.41 0 3565245..3569045 - 1266 74313775 yhdRP SSON_3387 - hypothetical protein 3158 52.31 0 3569113..3570582 - 489 161986436 cafA SSON_3388 - ribonuclease G 3159 53.70 0 3570572..3571165 - 197 74313777 yhdE SSON_3389 - Maf-like protein 3160 50.92 0 3571174..3571662 - 162 74313778 mreD SSON_3390 - rod shape-determining protein MreD 3161 55.98 +1 3571662..3572765 - 367 74313779 mreC SSON_3391 - cell wall structural complex MreBCD transmembrane component MreC 3162 53.89 0 3572831..3573934 - 367 74313780 mreB SSON_3392 - regulator of ftsI 3163 50.49 0 3574179..3576119 - 646 74313781 yhdA SSON_3393 - regulatory protein CsrD 3164 55.28 0 3576271..3577245 + 324 74313782 yhdH SSON_3394 - putative dehydrogenase 3165 47.06 -1 3577303..3577404 - 33 74313783 - SSON_3395 - hypothetical protein 3166 51.80 0 3578223..3578693 + 156 74313784 accB SSON_3396 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3167 53.41 0 3578704..3580053 + 449 74313785 accC SSON_3397 - acetyl-CoA carboxylase biotin carboxylase subunit 3168 54.32 0 3580162..3580404 + 80 74313786 yhdT SSON_3398 - hypothetical protein 3169 54.48 0 3580394..3581845 + 483 161986435 panF SSON_3399 - sodium/panthothenate symporter 3170 54.31 0 3581857..3582738 + 293 74313788 prmA SSON_3400 - ribosomal protein L11 methyltransferase 3171 52.28 0 3583067..3584032 + 321 74313789 yhdG SSON_3401 - tRNA-dihydrouridine synthase B 3172 47.14 -1 3584058..3584354 + 98 74313790 fis SSON_3402 - DNA-binding protein Fis 3173 47.57 0 3584440..3585324 + 294 161986434 yhdJ SSON_3403 - putative methyltransferase 3174 39.44 -2 3585408..3585587 + 59 74313792 yhdU SSON_3404 - hypothetical protein 3175 44.04 -1 3585590..3586252 - 220 74313793 envR SSON_3405 - DNA-binding transcriptional regulator EnvR 3176 52.33 0 3586651..3587808 + 385 74313794 acrE SSON_3406 - AcrE 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0