IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3072	 49.90	0	3475787..3476305	+	172	74313690	yhbO	SSON_3299	-	hypothetical protein
3073	 54.05	0	3476285..3476728	-	147	74313691	yhbP	SSON_3300	-	hypothetical protein
3074	 54.79	0	3476779..3477081	+	100	74313692	yhbQ	SSON_3301	-	GIY-YIG nuclease superfamily protein
3075	 55.36	0	3477068..3477571	-	167	74313693	yhbS	SSON_3302	-	hypothetical protein
3076	 51.62	0	3477565..3478089	-	174	74313694	yhbT	SSON_3303	-	hypothetical protein
3077	 57.43	+1	3478298..3479293	+	331	74313695	yhbU	SSON_3304	-	putative collagenase
3078	 56.19	+1	3479284..3480180	+	298	74313696	yhbV	SSON_3305	-	hypothetical protein
3079	 55.95	+1	3480386..3481393	+	335	74313697	yhbW	SSON_3306	-	hypothetical protein
3080	 53.09	0	3481511..3482755	-	414	74313698	mtr	SSON_3307	-	tryptophan permease
3081	 55.61	0	3482909..3484798	-	629	161986443	deaD	SSON_3308	-	ATP-dependent RNA helicase DeaD
3082	 48.25	0	3484978..3485862	-	294	74313700	yhbM	SSON_3309	-	lipoprotein NlpI
3083	 53.38	0	3485971..3488175	-	734	74313701	pnp	SSON_3310	-	polynucleotide phosphorylase/polyadenylase
3084	 51.85	0	3488353..3488622	-	89	74313702	rpsO	SSON_3311	-	30S ribosomal protein S15
3085	 52.38	0	3488771..3489715	-	314	74313703	truB	SSON_3312	-	tRNA pseudouridine synthase B
3086	 52.99	0	3489715..3490116	-	133	74313704	rbfA	SSON_3313	-	ribosome-binding factor A
3087	 53.46	0	3490280..3492952	-	890