IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3056	 51.01	0	3458037..3459371	-	444	74313674	yhaU	SSON_3282	-	putative transport protein
3057	 53.63	0	3459746..3461317	+	523	74313675	yhaG	SSON_3283	-	putative hydrolase
3058	 46.20	-1	3461635..3461937	+	100	74313676	-	SSON_3284	-	IS600 ORF1
3059	 51.96	0	3462078..3462791	+	237	74313677	-	SSON_3285	-	IS600 ORF2
3060	 43.57	-1	3463152..3463493	+	113	74313678	yhaV	SSON_3287	-	hypothetical protein
3061	 54.37	0	3463504..3464007	-	167	74313679	-	SSON_3288	-	IS1 ORF
3062	 47.40	-1	3464292..3466808	+	838	74313680	yraJ	SSON_3289	-	putative outer membrane protein
3063	 55.08	0	3467403..3468308	+	301	161986444	-	SSON_3290	-	insertion element IS2 transposase InsD
3064	 47.48	0	3468293..3469246	+	317	74313682	yraK	SSON_3291	-	putative fimbrial protein
3065	 54.36	0	3469289..3470149	-	286	74313683	yraL	SSON_3292	-	hypothetical protein
3066	 54.25	0	3470213..3472249	+	678	74313684	yraM	SSON_3293	-	putative glycosylase
3067	 54.80	0	3472207..3472602	+	131	74313685	yraN	SSON_3294	-	hypothetical protein
3068	 50.42	0	3472622..3473212	+	196	74313686	yraO	SSON_3295	-	DnaA initiator-associating protein DiaA
3069	 54.17	0	3473222..3473797	+	191	74313687	yraP	SSON_3296	-	hypothetical protein
3070	 57.44	+1	3473911..3474951	-	346	74313688	yraQ	SSON_3297	-	hypothetical protein
3071	 55.21	0	3475024..3475704	-	226