IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3047	 49.85	0	3448391..3449722	-	443	74313665	tdcC	SSON_3273	-	threonine/serine transporter TdcC
3048	 46.16	-1	3449744..3450733	-	329	74313666	tdcB	SSON_3274	-	threonine dehydratase
3049	 42.17	-2	3450832..3451770	-	312	74313667	tdcA	SSON_3275	-	DNA-binding transcriptional activator TdcA
3050	 31.88	-2	3451959..3452303	+	114	74313668	tdcR	SSON_3276	-	DNA-binding transcriptional activator TdcR
3051	 54.17	0	3452929..3453432	+	167	74313669	-	SSON_3277	-	IS1 ORF
3052	 47.27	-1	3454127..3454291	+	54	74313670	-	SSON_3278	-	hypothetical protein
3053	 53.49	0	3455089..3456234	-	381	161986446	yhaD	SSON_3279	-	glycerate kinase I
3054	 52.97	0	3456331..3457221	-	296	161986445	garR	SSON_3280	-	tartronate semialdehyde reductase
3055	 52.01	0	3457251..3458021	-	256	74313673	yhaF	SSON_3281	-	alpha-dehydro-beta-deoxy-D-glucarate aldolase
3056	 51.01	0	3458037..3459371	-	444	74313674	yhaU	SSON_3282	-	putative transport protein
3057	 53.63	0	3459746..3461317	+	523	74313675	yhaG	SSON_3283	-	putative hydrolase
3058	 46.20	-1	3461635..3461937	+	100	74313676	-	SSON_3284	-	IS600 ORF1
3059	 51.96	0	3462078..3462791	+	237	74313677	-	SSON_3285	-	IS600 ORF2
3060	 43.57	-1	3463152..3463493	+	113	74313678	yhaV	SSON_3287	-	hypothetical protein
3061	 54.37	0	3463504..3464007	-	167	74313679	-	SSON_3288	-	IS1 ORF
3062	 47.40	-1	3464292..3466808	+	838