version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3046 47.83 0 3447157..3448377 - 406 74313664 tdcD SSON_3272 - propionate/acetate kinase 3047 49.85 0 3448391..3449722 - 443 74313665 tdcC SSON_3273 - threonine/serine transporter TdcC 3048 46.16 -1 3449744..3450733 - 329 74313666 tdcB SSON_3274 - threonine dehydratase 3049 42.17 -2 3450832..3451770 - 312 74313667 tdcA SSON_3275 - DNA-binding transcriptional activator TdcA 3050 31.88 -2 3451959..3452303 + 114 74313668 tdcR SSON_3276 - DNA-binding transcriptional activator TdcR 3051 54.17 0 3452929..3453432 + 167 74313669 - SSON_3277 - IS1 ORF 3052 47.27 -1 3454127..3454291 + 54 74313670 - SSON_3278 - hypothetical protein 3053 53.49 0 3455089..3456234 - 381 161986446 yhaD SSON_3279 - glycerate kinase I 3054 52.97 0 3456331..3457221 - 296 161986445 garR SSON_3280 - tartronate semialdehyde reductase 3055 52.01 0 3457251..3458021 - 256 74313673 yhaF SSON_3281 - alpha-dehydro-beta-deoxy-D-glucarate aldolase 3056 51.01 0 3458037..3459371 - 444 74313674 yhaU SSON_3282 - putative transport protein 3057 53.63 0 3459746..3461317 + 523 74313675 yhaG SSON_3283 - putative hydrolase 3058 46.20 -1 3461635..3461937 + 100 74313676 - SSON_3284 - IS600 ORF1 3059 51.96 0 3462078..3462791 + 237 74313677 - SSON_3285 - IS600 ORF2 3060 43.57 -1 3463152..3463493 + 113 74313678 yhaV SSON_3287 - hypothetical protein 3061 54.37 0 3463504..3464007 - 167 74313679 - SSON_3288 - IS1 ORF 3062 47.40 -1 3464292..3466808 + 838 74313680 yraJ SSON_3289 - putative outer membrane protein 3063 55.08 0 3467403..3468308 + 301 161986444 - SSON_3290 - insertion element IS2 transposase InsD 3064 47.48 0 3468293..3469246 + 317 74313682 yraK SSON_3291 - putative fimbrial protein 3065 54.36 0 3469289..3470149 - 286 74313683 yraL SSON_3292 - hypothetical protein 3066 54.25 0 3470213..3472249 + 678 74313684 yraM SSON_3293 - putative glycosylase 3067 54.80 0 3472207..3472602 + 131 74313685 yraN SSON_3294 - hypothetical protein 3068 50.42 0 3472622..3473212 + 196 74313686 yraO SSON_3295 - DnaA initiator-associating protein DiaA 3069 54.17 0 3473222..3473797 + 191 74313687 yraP SSON_3296 - hypothetical protein 3070 57.44 +1 3473911..3474951 - 346 74313688 yraQ SSON_3297 - hypothetical protein 3071 55.21 0 3475024..3475704 - 226 74313689 yraR SSON_3298 - hypothetical protein 3072 49.90 0 3475787..3476305 + 172 74313690 yhbO SSON_3299 - hypothetical protein 3073 54.05 0 3476285..3476728 - 147 74313691 yhbP SSON_3300 - hypothetical protein 3074 54.79 0 3476779..3477081 + 100 74313692 yhbQ SSON_3301 - GIY-YIG nuclease superfamily protein 3075 55.36 0 3477068..3477571 - 167 74313693 yhbS SSON_3302 - hypothetical protein 3076 51.62 0 3477565..3478089 - 174 74313694 yhbT SSON_3303 - hypothetical protein 3077 57.43 +1 3478298..3479293 + 331 74313695 yhbU SSON_3304 - putative collagenase 3078 56.19 +1 3479284..3480180 + 298 74313696 yhbV SSON_3305 - hypothetical protein 3079 55.95 +1 3480386..3481393 + 335 74313697 yhbW SSON_3306 - hypothetical protein 3080 53.09 0 3481511..3482755 - 414 74313698 mtr SSON_3307 - tryptophan permease 3081 55.61 0 3482909..3484798 - 629 161986443 deaD SSON_3308 - ATP-dependent RNA helicase DeaD 3082 48.25 0 3484978..3485862 - 294 74313700 yhbM SSON_3309 - lipoprotein NlpI 3083 53.38 0 3485971..3488175 - 734 74313701 pnp SSON_3310 - polynucleotide phosphorylase/polyadenylase 3084 51.85 0 3488353..3488622 - 89 74313702 rpsO SSON_3311 - 30S ribosomal protein S15 3085 52.38 0 3488771..3489715 - 314 74313703 truB SSON_3312 - tRNA pseudouridine synthase B 3086 52.99 0 3489715..3490116 - 133 74313704 rbfA SSON_3313 - ribosome-binding factor A 3087 53.46 0 3490280..3492952 - 890 74313705 infB SSON_3314 - translation initiation factor IF-2 3088 52.82 0 3492977..3494464 - 495 74313706 nusA SSON_3315 - transcription elongation factor NusA 3089 48.57 0 3494492..3494944 - 150 161986442 yhbC SSON_3316 - hypothetical protein 3090 53.03 0 3495533..3496705 + 390 74313708 - SSON_3318 - IS21 ORF1 3091 52.63 0 3496705..3497502 + 265 74313709 - SSON_3319 - IS21 ORF2 3092 52.01 0 3497709..3499052 + 447 74313710 argG SSON_3320 - argininosuccinate synthase 3093 42.91 -2 3499060..3500667 - 535 74313711 yhbX SSON_3321 - putative alkaline phosphatase I 3094 49.85 0 3501246..3501578 - 110 74313712 secG SSON_3323 - preprotein translocase subunit SecG 3095 53.96 0 3501806..3503143 - 445 74313713 glmM SSON_3324 - phosphoglucosamine mutase 3096 51.59 0 3503136..3503984 - 282 161986441 folP SSON_3325 - dihydropteroate synthase 3097 53.44 0 3504074..3506008 - 644 74313715 hflB SSON_3326 - ATP-dependent metalloprotease 3098 50.48 0 3506108..3506737 - 209 74313716 rrmJ SSON_3327 - 23S rRNA methyltransferase J 3099 48.64 0 3506863..3507156 + 97 74313717 yhbY SSON_3328 - RNA-binding protein YhbY 3100 48.43 0 3507312..3507788 - 158 161986440 greA SSON_3329 - transcription elongation factor GreA 3101 52.79 0 3508036..3509469 + 477 74313719 dacB SSON_3330 - D-alanyl-D-alanine carboxypeptidase/endopeptidase 3102 52.77 0 3509655..3510827 - 390 74313720 obgE SSON_3331 - GTPase ObgE 3103 52.80 0 3510843..3511808 - 321 74313721 yhbE SSON_3332 - hypothetical protein 3104 50.00 0 3511935..3512192 - 85 74313722 rpmA SSON_3333 - 50S ribosomal protein L27 3105 48.40 0 3512213..3512524 - 103 74313723 rplU SSON_3334 - 50S ribosomal protein L21 3106 52.47 0 3512783..3513754 + 323 74313724 ispB SSON_3335 - octaprenyl diphosphate synthase 3107 50.54 0 3513983..3514261 + 92 74313725 nlp SSON_3336 - DNA-binding transcriptional regulator Nlp 3108 53.33 0 3514309..3515568 - 419 74313726 murA SSON_3337 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3109 50.37 0 3515623..3515892 - 89 74313727 yrbA SSON_3338 - hypothetical protein 3110 52.05 0 3516037..3516426 - 129 74313728 yrbB SSON_3339 - hypothetical protein 3111 52.20 0 3516330..3516965 - 211 74313729 yrbC SSON_3340 - hypothetical protein 3112 49.82 0 3516984..3517535 - 183 74313730 yrbD SSON_3341 - hypothetical protein 3113 55.04 0 3517540..3518322 - 260 74313731 yrbE SSON_3342 - hypothetical protein 3114 54.57 0 3518330..3519139 - 269 74313732 yrbF SSON_3343 - putative ABC transporter ATP-binding protein YrbF 3115 51.94 0 3519349..3520326 + 325 74313733 yrbG SSON_3344 - putative calcium/sodium:proton antiporter 3116 52.38 0 3520340..3521326 + 328 74313734 yrbH SSON_3345 - D-arabinose 5-phosphate isomerase 3117 52.56 0 3521347..3521913 + 188 74313735 yrbI SSON_3346 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3118 46.35 -1 3521910..3522485 + 191 74313736 yrbK SSON_3347 - hypothetical protein 3119 49.64 0 3522454..3523011 + 185 74313737 yhbN SSON_3348 - hypothetical protein 3120 54.41 0 3523018..3523743 + 241 74313738 yhbG SSON_3349 - putative ABC transporter ATP-binding protein YhbG 3121 52.79 0 3523791..3525224 + 477 74313739 rpoN SSON_3350 - RNA polymerase factor sigma-54 3122 44.79 -1 3525247..3525534 + 95 74313740 yhbH SSON_3351 - putative sigma(54) modulation protein 3123 52.03 0 3525652..3526143 + 163 74313741 ptsN SSON_3352 - sugar-specific enzyme IIA component of PTS 3124 52.16 0 3526189..3527043 + 284 74313742 yhbJ SSON_3353 - hypothetical protein 3125 50.18 0 3527040..3527312 + 90 74313743 ptsO SSON_3354 - phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3126 51.03 0 3527526..3528158 + 210 74313744 yrbL SSON_3355 - hypothetical protein 3127 51.58 0 3528155..3528883 - 242 74313745 mtgA SSON_3356 - monofunctional biosynthetic peptidoglycan transglycosylase 3128 52.64 0 3528880..3529542 - 220 74313746 yhbL SSON_3357 - isoprenoid biosynthesis protein 3129 50.41 0 3529763..3532099 - 778 74313747 arcB SSON_3358 - aerobic respiration control sensor protein ArcB 3130 56.13 +1 3532195..3533124 - 309 74313748 yhcC SSON_3359 - hypothetical protein 3131 57.03 +1 3533706..3538259 + 1517 74313749 gltB SSON_3360 - glutamate synthase subunit alpha 3132 55.74 0 3538272..3539690 + 472 74313750 gltD SSON_3361 - glutamate synthase subunit beta 3133 48.60 0 3540751..3541215 - 154 74313751 yhcH SSON_3362 - hypothetical protein 3134 57.88 +1 3541212..3542087 - 291 161986439 yhcI SSON_3363 - N-acetylmannosamine kinase 3135 57.68 +1 3542084..3542773 - 229 74313753 yhcJ SSON_3364 - N-acetylmannosamine-6-phosphate 2-epimerase 3136 55.06 0 3542821..3544311 - 496 161986438 nanT SSON_3365 - putative sialic acid transporter 3137 52.01 0 3544421..3545314 - 297 74313755 nanA SSON_3366 - N-acetylneuraminate lyase 3138 52.53 0 3545436..3546227 - 263 74313756 yhcK SSON_3367 - transcriptional regulator NanR 3139 50.87 0 3546607..3547929 + 440 74313757 yhcL SSON_3368 - putative cryptic C4-dicarboxylate transporter DcuD 3140 55.02 0 3547972..3548469 - 165 74313758 sspB SSON_3369 - ClpXP protease specificity-enhancing factor 3141 53.68 0 3548475..3549113 - 212 74313759 sspA SSON_3370 - stringent starvation protein A 3142 52.16 0 3549508..3549900 - 130 74313760 rpsI SSON_3371 - 30S ribosomal protein S9 3143 50.12 0 3549916..3550344 - 142 74313761 rplM SSON_3372 - 50S ribosomal protein L13 3144 52.04 0 3550563..3551690 - 375 74313762 yhcM SSON_3373 - hypothetical protein 3145 54.07 0 3551878..3552282 + 134 74313763 yhcB SSON_3374 - cytochrome d ubiquinol oxidase subunit III 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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