IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3043	 55.92	+1	3442990..3443817	-	275	74313661	yhaP	SSON_3269	-	putative L-serine dehydratase
3044	 52.10	0	3444426..3444878	-	150	74313662	yhaR	SSON_3270	-	hypothetical protein
3045	 53.03	0	3444829..3447123	-	764	74313663	tdcE	SSON_3271	-	formate acetyltransferase 3
3046	 47.83	0	3447157..3448377	-	406	74313664	tdcD	SSON_3272	-	propionate/acetate kinase
3047	 49.85	0	3448391..3449722	-	443	74313665	tdcC	SSON_3273	-	threonine/serine transporter TdcC
3048	 46.16	-1	3449744..3450733	-	329	74313666	tdcB	SSON_3274	-	threonine dehydratase
3049	 42.17	-2	3450832..3451770	-	312	74313667	tdcA	SSON_3275	-	DNA-binding transcriptional activator TdcA
3050	 31.88	-2	3451959..3452303	+	114	74313668	tdcR	SSON_3276	-	DNA-binding transcriptional activator TdcR
3051	 54.17	0	3452929..3453432	+	167	74313669	-	SSON_3277	-	IS1 ORF
3052	 47.27	-1	3454127..3454291	+	54	74313670	-	SSON_3278	-	hypothetical protein
3053	 53.49	0	3455089..3456234	-	381	161986446	yhaD	SSON_3279	-	glycerate kinase I
3054	 52.97	0	3456331..3457221	-	296	161986445	garR	SSON_3280	-	tartronate semialdehyde reductase
3055	 52.01	0	3457251..3458021	-	256	74313673	yhaF	SSON_3281	-	alpha-dehydro-beta-deoxy-D-glucarate aldolase
3056	 51.01	0	3458037..3459371	-	444	74313674	yhaU	SSON_3282	-	putative transport protein
3057	 53.63	0	3459746..3461317	+	523	74313675	yhaG	SSON_3283	-	putative hydrolase
3058	 46.20	-1	3461635..3461937	+	100