IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3020	 54.17	0	3419244..3420731	-	495	74313638	uxaA	SSON_3244	-	altronate hydrolase
3021	 54.00	0	3420746..3422158	-	470	74313639	uxaC	SSON_3245	-	glucuronate isomerase
3022	 47.29	-1	3424021..3425109	-	362	74313640	-	SSON_3247	-	putative minor pilin and initiator
3023	 46.02	-1	3425106..3427808	-	900	74313641	tsaC	SSON_3248	-	outer membrane fimbrial user protein
3024	 52.91	0	3428116..3429147	-	343	74313642	-	SSON_3249	-	IS630 orf
3025	 46.26	-1	3429244..3429537	-	97	74313643	-	SSON_3250	-	putative adhesin major subunit pilin
3026	 54.44	0	3430014..3430520	+	168	74313644	-	SSON_3251	-	IS1 ORF
3027	 39.90	-2	3430455..3431063	-	202	74313645	-	SSON_3252	-	putative fimbrial protein
3028	 49.81	0	3431359..3432135	+	258	74313646	exuR	SSON_3253	-	DNA-binding transcriptional repressor ExuR
3029	 50.38	0	3432480..3433142	+	220	74313647	yqjA	SSON_3254	-	hypothetical protein
3030	 53.91	0	3433146..3433529	+	127	74313648	yqjB	SSON_3255	-	hypothetical protein
3031	 48.44	0	3433661..3434044	+	127	74313649	yqjC	SSON_3256	-	hypothetical protein
3032	 54.25	0	3434082..3434387	+	101	74313650	yqjD	SSON_3257	-	hypothetical protein
3033	 52.84	0	3434390..3434794	+	134	74313651	yqjE	SSON_3258	-	hypothetical protein
3034	 57.00	+1	3434784..3435083	+	99	74313652	-	SSON_3259	-	hypothetical protein
3035	 49.28	0	3435179..3435661	+	160