IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3013	 52.64	0	3412270..3412989	+	239	74313631	trmB	SSON_3236	-	tRNA (guanine-N(7))-methyltransferase
3014	 48.62	0	3412989..3413315	+	108	161986447	yggL	SSON_3237	-	hypothetical protein
3015	 52.50	0	3413499..3414218	+	239	74313633	yggN	SSON_3238	-	hypothetical protein
3016	 52.72	0	3414394..3415440	+	348	74313634	ansB	SSON_3239	-	L-asparaginase II
3017	 54.37	0	3416259..3416762	+	167	74313635	-	SSON_3241	-	IS1 ORF
3018	 55.26	0	3417361..3418605	+	414	74313636	ygjU	SSON_3242	-	serine/threonine transporter SstT
3019	 49.82	0	3418610..3419161	-	183	74313637	ygjV	SSON_3243	-	hypothetical protein
3020	 54.17	0	3419244..3420731	-	495	74313638	uxaA	SSON_3244	-	altronate hydrolase
3021	 54.00	0	3420746..3422158	-	470	74313639	uxaC	SSON_3245	-	glucuronate isomerase
3022	 47.29	-1	3424021..3425109	-	362	74313640	-	SSON_3247	-	putative minor pilin and initiator
3023	 46.02	-1	3425106..3427808	-	900	74313641	tsaC	SSON_3248	-	outer membrane fimbrial user protein
3024	 52.91	0	3428116..3429147	-	343	74313642	-	SSON_3249	-	IS630 orf
3025	 46.26	-1	3429244..3429537	-	97	74313643	-	SSON_3250	-	putative adhesin major subunit pilin
3026	 54.44	0	3430014..3430520	+	168	74313644	-	SSON_3251	-	IS1 ORF
3027	 39.90	-2	3430455..3431063	-	202	74313645	-	SSON_3252	-	putative fimbrial protein
3028	 49.81	0	3431359..3432135	+	258