IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3003	 56.96	+1	3394179..3394940	-	253	161986448	-	SSON_3224	-	hypothetical protein
3004	 47.04	-1	3396289..3399804	-	1171	74313622	-	SSON_3225	-	superfamily I DNA helicases
3005	 51.08	0	3400832..3401851	-	339	74313623	-	SSON_3226	-	putative transposase
3006	 51.69	0	3403339..3404046	-	235	74313624	yqgA	SSON_3229	-	putative transport protein
3007	 51.21	0	3404364..3406394	+	676	74313625	speC	SSON_3230	-	ornithine decarboxylase
3008	 49.38	0	3406591..3407718	-	375	74313626	-	SSON_3231	-	putative transposase
3009	 49.50	0	3408152..3409456	-	434	74313627	nupG	SSON_3232	-	transport of nucleosides, permease protein
3010	 50.88	0	3409610..3410692	-	360	74313628	mltC	SSON_3233	-	murein transglycosylase C
3011	 47.46	0	3410754..3411029	-	91	74313629	yggX	SSON_3234	-	hypothetical protein
3012	 55.46	0	3411057..3412109	-	350	74313630	mutY	SSON_3235	-	adenine DNA glycosylase
3013	 52.64	0	3412270..3412989	+	239	74313631	trmB	SSON_3236	-	tRNA (guanine-N(7))-methyltransferase
3014	 48.62	0	3412989..3413315	+	108	161986447	yggL	SSON_3237	-	hypothetical protein
3015	 52.50	0	3413499..3414218	+	239	74313633	yggN	SSON_3238	-	hypothetical protein
3016	 52.72	0	3414394..3415440	+	348	74313634	ansB	SSON_3239	-	L-asparaginase II
3017	 54.37	0	3416259..3416762	+	167	74313635	-	SSON_3241	-	IS1 ORF
3018	 55.26	0	3417361..3418605	+	414