IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2994	 54.14	0	3379694..3382519	+	941	74313612	ebgA	SSON_3215	-	evolved beta-D-galactosidase, alpha subunit; cryptic gene
2995	 45.56	-1	3382783..3383232	+	149	74313613	ebgC	SSON_3216	-	cryptic beta-D-galactosidase subunit beta
2996	 47.45	-1	3383295..3383882	+	195	74313614	-	SSON_3217	-	hypothetical protein
2997	 52.81	0	3383983..3385014	+	343	74313615	-	SSON_3218	-	IS630 orf
2998	 50.14	0	3385443..3386156	+	237	74313616	yghS	SSON_3219	-	hypothetical protein
2999	 53.49	0	3386188..3386946	+	252	74313617	yghR	SSON_3220	-	hypothetical protein
3000	 52.54	0	3386992..3388350	+	452	74313618	yghQ	SSON_3221	-	hypothetical protein
3001	 54.17	0	3388344..3388847	-	167	74313619	-	SSON_3222	-	IS1 ORF
3002	 41.76	-2	3389961..3393818	-	1285	74313620	sigA	SSON_3223	-	serine protease
3003	 56.96	+1	3394179..3394940	-	253	161986448	-	SSON_3224	-	hypothetical protein
3004	 47.04	-1	3396289..3399804	-	1171	74313622	-	SSON_3225	-	superfamily I DNA helicases
3005	 51.08	0	3400832..3401851	-	339	74313623	-	SSON_3226	-	putative transposase
3006	 51.69	0	3403339..3404046	-	235	74313624	yqgA	SSON_3229	-	putative transport protein
3007	 51.21	0	3404364..3406394	+	676	74313625	speC	SSON_3230	-	ornithine decarboxylase
3008	 49.38	0	3406591..3407718	-	375	74313626	-	SSON_3231	-	putative transposase
3009	 49.50	0	3408152..3409456	-	434