IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2984	 53.04	0	3367278..3369119	+	613	74313602	rpoD	SSON_3204	-	RNA polymerase sigma factor RpoD
2985	 53.75	0	3369204..3370550	-	448	74313603	-	SSON_3205	-	IS4 orf
2986	 53.06	0	3370637..3371143	-	168	74313604	ygjF	SSON_3206	-	G/U mismatch-specific DNA glycosylase
2987	 56.60	+1	3371397..3372161	-	254	74313605	yqjH	SSON_3208	-	hypothetical protein
2988	 53.21	0	3372449..3373072	+	207	74313606	yqjI	SSON_3209	-	hypothetical protein
2989	 55.10	0	3373179..3374699	-	506	74313607	aer	SSON_3210	-	aerotaxis sensor receptor, flavoprotein
2990	 55.08	0	3375090..3376496	+	468	161986449	ygjG	SSON_3211	-	putrescine--2-oxoglutarate aminotransferase
2991	 52.25	0	3376538..3376870	-	110	74313609	ygjH	SSON_3212	-	hypothetical protein
2992	 51.42	0	3377089..3378072	+	327	74313610	ebgR	SSON_3213	-	DNA-binding transcriptional repressor EbgR
2993	 53.90	0	3378132..3379478	-	448	74313611	-	SSON_3214	-	IS4 orf
2994	 54.14	0	3379694..3382519	+	941	74313612	ebgA	SSON_3215	-	evolved beta-D-galactosidase, alpha subunit; cryptic gene
2995	 45.56	-1	3382783..3383232	+	149	74313613	ebgC	SSON_3216	-	cryptic beta-D-galactosidase subunit beta
2996	 47.45	-1	3383295..3383882	+	195	74313614	-	SSON_3217	-	hypothetical protein
2997	 52.81	0	3383983..3385014	+	343	74313615	-	SSON_3218	-	IS630 orf
2998	 50.14	0	3385443..3386156	+	237	74313616	yghS	SSON_3219	-	hypothetical protein
2999	 53.49	0	3386188..3386946	+	252