IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2978	 53.73	0	3360694..3361605	+	303	74313596	ttdA	SSON_3198	-	tartrate dehydratase subunit alpha
2979	 53.63	0	3361602..3362207	+	201	74313597	ttdB	SSON_3199	-	L(+)-tartrate dehydratase subunit beta
2980	 55.33	0	3362256..3363719	+	487	74313598	ygjE	SSON_3200	-	hypothetical protein
2981	 57.30	+1	3363762..3364775	-	337	74313599	ygjD	SSON_3201	-	O-sialoglycoprotein endopeptidase
2982	 51.85	0	3365012..3365227	+	71	74313600	rpsU	SSON_3202	-	30S ribosomal protein S21
2983	 52.35	0	3365338..3367083	+	581	74313601	dnaG	SSON_3203	-	DNA primase
2984	 53.04	0	3367278..3369119	+	613	74313602	rpoD	SSON_3204	-	RNA polymerase sigma factor RpoD
2985	 53.75	0	3369204..3370550	-	448	74313603	-	SSON_3205	-	IS4 orf
2986	 53.06	0	3370637..3371143	-	168	74313604	ygjF	SSON_3206	-	G/U mismatch-specific DNA glycosylase
2987	 56.60	+1	3371397..3372161	-	254	74313605	yqjH	SSON_3208	-	hypothetical protein
2988	 53.21	0	3372449..3373072	+	207	74313606	yqjI	SSON_3209	-	hypothetical protein
2989	 55.10	0	3373179..3374699	-	506	74313607	aer	SSON_3210	-	aerotaxis sensor receptor, flavoprotein
2990	 55.08	0	3375090..3376496	+	468	161986449	ygjG	SSON_3211	-	putrescine--2-oxoglutarate aminotransferase
2991	 52.25	0	3376538..3376870	-	110	74313609	ygjH	SSON_3212	-	hypothetical protein
2992	 51.42	0	3377089..3378072	+	327	74313610	ebgR	SSON_3213	-	DNA-binding transcriptional repressor EbgR
2993	 53.90	0	3378132..3379478	-	448