version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2977 53.88 0 3358925..3359542 + 205 74313595 ygiH SSON_3196 - putative glycerol-3-phosphate acyltransferase PlsY 2978 53.73 0 3360694..3361605 + 303 74313596 ttdA SSON_3198 - tartrate dehydratase subunit alpha 2979 53.63 0 3361602..3362207 + 201 74313597 ttdB SSON_3199 - L(+)-tartrate dehydratase subunit beta 2980 55.33 0 3362256..3363719 + 487 74313598 ygjE SSON_3200 - hypothetical protein 2981 57.30 +1 3363762..3364775 - 337 74313599 ygjD SSON_3201 - O-sialoglycoprotein endopeptidase 2982 51.85 0 3365012..3365227 + 71 74313600 rpsU SSON_3202 - 30S ribosomal protein S21 2983 52.35 0 3365338..3367083 + 581 74313601 dnaG SSON_3203 - DNA primase 2984 53.04 0 3367278..3369119 + 613 74313602 rpoD SSON_3204 - RNA polymerase sigma factor RpoD 2985 53.75 0 3369204..3370550 - 448 74313603 - SSON_3205 - IS4 orf 2986 53.06 0 3370637..3371143 - 168 74313604 ygjF SSON_3206 - G/U mismatch-specific DNA glycosylase 2987 56.60 +1 3371397..3372161 - 254 74313605 yqjH SSON_3208 - hypothetical protein 2988 53.21 0 3372449..3373072 + 207 74313606 yqjI SSON_3209 - hypothetical protein 2989 55.10 0 3373179..3374699 - 506 74313607 aer SSON_3210 - aerotaxis sensor receptor, flavoprotein 2990 55.08 0 3375090..3376496 + 468 161986449 ygjG SSON_3211 - putrescine--2-oxoglutarate aminotransferase 2991 52.25 0 3376538..3376870 - 110 74313609 ygjH SSON_3212 - hypothetical protein 2992 51.42 0 3377089..3378072 + 327 74313610 ebgR SSON_3213 - DNA-binding transcriptional repressor EbgR 2993 53.90 0 3378132..3379478 - 448 74313611 - SSON_3214 - IS4 orf 2994 54.14 0 3379694..3382519 + 941 74313612 ebgA SSON_3215 - evolved beta-D-galactosidase, alpha subunit; cryptic gene 2995 45.56 -1 3382783..3383232 + 149 74313613 ebgC SSON_3216 - cryptic beta-D-galactosidase subunit beta 2996 47.45 -1 3383295..3383882 + 195 74313614 - SSON_3217 - hypothetical protein 2997 52.81 0 3383983..3385014 + 343 74313615 - SSON_3218 - IS630 orf 2998 50.14 0 3385443..3386156 + 237 74313616 yghS SSON_3219 - hypothetical protein 2999 53.49 0 3386188..3386946 + 252 74313617 yghR SSON_3220 - hypothetical protein 3000 52.54 0 3386992..3388350 + 452 74313618 yghQ SSON_3221 - hypothetical protein 3001 54.17 0 3388344..3388847 - 167 74313619 - SSON_3222 - IS1 ORF 3002 41.76 -2 3389961..3393818 - 1285 74313620 sigA SSON_3223 - serine protease 3003 56.96 +1 3394179..3394940 - 253 161986448 - SSON_3224 - hypothetical protein 3004 47.04 -1 3396289..3399804 - 1171 74313622 - SSON_3225 - superfamily I DNA helicases 3005 51.08 0 3400832..3401851 - 339 74313623 - SSON_3226 - putative transposase 3006 51.69 0 3403339..3404046 - 235 74313624 yqgA SSON_3229 - putative transport protein 3007 51.21 0 3404364..3406394 + 676 74313625 speC SSON_3230 - ornithine decarboxylase 3008 49.38 0 3406591..3407718 - 375 74313626 - SSON_3231 - putative transposase 3009 49.50 0 3408152..3409456 - 434 74313627 nupG SSON_3232 - transport of nucleosides, permease protein 3010 50.88 0 3409610..3410692 - 360 74313628 mltC SSON_3233 - murein transglycosylase C 3011 47.46 0 3410754..3411029 - 91 74313629 yggX SSON_3234 - hypothetical protein 3012 55.46 0 3411057..3412109 - 350 74313630 mutY SSON_3235 - adenine DNA glycosylase 3013 52.64 0 3412270..3412989 + 239 74313631 trmB SSON_3236 - tRNA (guanine-N(7))-methyltransferase 3014 48.62 0 3412989..3413315 + 108 161986447 yggL SSON_3237 - hypothetical protein 3015 52.50 0 3413499..3414218 + 239 74313633 yggN SSON_3238 - hypothetical protein 3016 52.72 0 3414394..3415440 + 348 74313634 ansB SSON_3239 - L-asparaginase II 3017 54.37 0 3416259..3416762 + 167 74313635 - SSON_3241 - IS1 ORF 3018 55.26 0 3417361..3418605 + 414 74313636 ygjU SSON_3242 - serine/threonine transporter SstT 3019 49.82 0 3418610..3419161 - 183 74313637 ygjV SSON_3243 - hypothetical protein 3020 54.17 0 3419244..3420731 - 495 74313638 uxaA SSON_3244 - altronate hydrolase 3021 54.00 0 3420746..3422158 - 470 74313639 uxaC SSON_3245 - glucuronate isomerase 3022 47.29 -1 3424021..3425109 - 362 74313640 - SSON_3247 - putative minor pilin and initiator 3023 46.02 -1 3425106..3427808 - 900 74313641 tsaC SSON_3248 - outer membrane fimbrial user protein 3024 52.91 0 3428116..3429147 - 343 74313642 - SSON_3249 - IS630 orf 3025 46.26 -1 3429244..3429537 - 97 74313643 - SSON_3250 - putative adhesin major subunit pilin 3026 54.44 0 3430014..3430520 + 168 74313644 - SSON_3251 - IS1 ORF 3027 39.90 -2 3430455..3431063 - 202 74313645 - SSON_3252 - putative fimbrial protein 3028 49.81 0 3431359..3432135 + 258 74313646 exuR SSON_3253 - DNA-binding transcriptional repressor ExuR 3029 50.38 0 3432480..3433142 + 220 74313647 yqjA SSON_3254 - hypothetical protein 3030 53.91 0 3433146..3433529 + 127 74313648 yqjB SSON_3255 - hypothetical protein 3031 48.44 0 3433661..3434044 + 127 74313649 yqjC SSON_3256 - hypothetical protein 3032 54.25 0 3434082..3434387 + 101 74313650 yqjD SSON_3257 - hypothetical protein 3033 52.84 0 3434390..3434794 + 134 74313651 yqjE SSON_3258 - hypothetical protein 3034 57.00 +1 3434784..3435083 + 99 74313652 - SSON_3259 - hypothetical protein 3035 49.28 0 3435179..3435661 + 160 74313653 yqjF SSON_3260 - hypothetical protein 3036 51.28 0 3435731..3436744 + 337 74313654 yqjG SSON_3261 - putative transferase 3037 51.37 0 3437009..3437374 + 121 74313655 yhaH SSON_3262 - putative cytochrome 3038 44.54 -1 3437616..3437972 + 118 74313656 yhaI SSON_3263 - putative cytochrome 3039 53.28 0 3439024..3439725 + 233 74313657 yhaK SSON_3265 - hypothetical protein 3040 52.05 0 3439742..3439912 + 56 74313658 yhaL SSON_3266 - hypothetical protein 3041 56.45 +1 3440046..3441356 - 436 74313659 yhaNM SSON_3267 - hypothetical protein 3042 50.53 0 3441384..3442715 - 443 74313660 yhaO SSON_3268 - putative transport system permease protein 3043 55.92 +1 3442990..3443817 - 275 74313661 yhaP SSON_3269 - putative L-serine dehydratase 3044 52.10 0 3444426..3444878 - 150 74313662 yhaR SSON_3270 - hypothetical protein 3045 53.03 0 3444829..3447123 - 764 74313663 tdcE SSON_3271 - formate acetyltransferase 3 3046 47.83 0 3447157..3448377 - 406 74313664 tdcD SSON_3272 - propionate/acetate kinase 3047 49.85 0 3448391..3449722 - 443 74313665 tdcC SSON_3273 - threonine/serine transporter TdcC 3048 46.16 -1 3449744..3450733 - 329 74313666 tdcB SSON_3274 - threonine dehydratase 3049 42.17 -2 3450832..3451770 - 312 74313667 tdcA SSON_3275 - DNA-binding transcriptional activator TdcA 3050 31.88 -2 3451959..3452303 + 114 74313668 tdcR SSON_3276 - DNA-binding transcriptional activator TdcR 3051 54.17 0 3452929..3453432 + 167 74313669 - SSON_3277 - IS1 ORF 3052 47.27 -1 3454127..3454291 + 54 74313670 - SSON_3278 - hypothetical protein 3053 53.49 0 3455089..3456234 - 381 161986446 yhaD SSON_3279 - glycerate kinase I 3054 52.97 0 3456331..3457221 - 296 161986445 garR SSON_3280 - tartronate semialdehyde reductase 3055 52.01 0 3457251..3458021 - 256 74313673 yhaF SSON_3281 - alpha-dehydro-beta-deoxy-D-glucarate aldolase 3056 51.01 0 3458037..3459371 - 444 74313674 yhaU SSON_3282 - putative transport protein 3057 53.63 0 3459746..3461317 + 523 74313675 yhaG SSON_3283 - putative hydrolase 3058 46.20 -1 3461635..3461937 + 100 74313676 - SSON_3284 - IS600 ORF1 3059 51.96 0 3462078..3462791 + 237 74313677 - SSON_3285 - IS600 ORF2 3060 43.57 -1 3463152..3463493 + 113 74313678 yhaV SSON_3287 - hypothetical protein 3061 54.37 0 3463504..3464007 - 167 74313679 - SSON_3288 - IS1 ORF 3062 47.40 -1 3464292..3466808 + 838 74313680 yraJ SSON_3289 - putative outer membrane protein 3063 55.08 0 3467403..3468308 + 301 161986444 - SSON_3290 - insertion element IS2 transposase InsD 3064 47.48 0 3468293..3469246 + 317 74313682 yraK SSON_3291 - putative fimbrial protein 3065 54.36 0 3469289..3470149 - 286 74313683 yraL SSON_3292 - hypothetical protein 3066 54.25 0 3470213..3472249 + 678 74313684 yraM SSON_3293 - putative glycosylase 3067 54.80 0 3472207..3472602 + 131 74313685 yraN SSON_3294 - hypothetical protein 3068 50.42 0 3472622..3473212 + 196 74313686 yraO SSON_3295 - DnaA initiator-associating protein DiaA 3069 54.17 0 3473222..3473797 + 191 74313687 yraP SSON_3296 - hypothetical protein 3070 57.44 +1 3473911..3474951 - 346 74313688 yraQ SSON_3297 - hypothetical protein 3071 55.21 0 3475024..3475704 - 226 74313689 yraR SSON_3298 - hypothetical protein 3072 49.90 0 3475787..3476305 + 172 74313690 yhbO SSON_3299 - hypothetical protein 3073 54.05 0 3476285..3476728 - 147 74313691 yhbP SSON_3300 - hypothetical protein 3074 54.79 0 3476779..3477081 + 100 74313692 yhbQ SSON_3301 - GIY-YIG nuclease superfamily protein 3075 55.36 0 3477068..3477571 - 167 74313693 yhbS SSON_3302 - hypothetical protein 3076 51.62 0 3477565..3478089 - 174 74313694 yhbT SSON_3303 - hypothetical protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0