IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2970	 56.62	+1	3349568..3351001	-	477	74313588	-	SSON_3189	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
2971	 56.00	+1	3351049..3353889	-	946	74313589	glnE	SSON_3190	-	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
2972	 54.84	0	3353912..3355213	-	433	74313590	ygiF	SSON_3191	-	hypothetical protein
2973	 52.33	0	3355455..3356075	+	206	74313591	ygiM	SSON_3192	-	putative signal transduction protein
2974	 56.01	+1	3356139..3357377	+	412	74313592	cca	SSON_3193	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
2975	 52.80	0	3357540..3358361	-	273	74313593	bacA	SSON_3194	-	undecaprenyl pyrophosphate phosphatase
2976	 50.54	0	3358452..3358823	-	123	74313594	folB	SSON_3195	-	bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase
2977	 53.88	0	3358925..3359542	+	205	74313595	ygiH	SSON_3196	-	putative glycerol-3-phosphate acyltransferase PlsY
2978	 53.73	0	3360694..3361605	+	303	74313596	ttdA	SSON_3198	-	tartrate dehydratase subunit alpha
2979	 53.63	0	3361602..3362207	+	201	74313597	ttdB	SSON_3199	-	L(+)-tartrate dehydratase subunit beta
2980	 55.33	0	3362256..3363719	+	487	74313598	ygjE	SSON_3200	-	hypothetical protein
2981	 57.30	+1	3363762..3364775	-	337	74313599	ygjD	SSON_3201	-	O-sialoglycoprotein endopeptidase
2982	 51.85	0	3365012..3365227	+	71	74313600	rpsU	SSON_3202	-	30S ribosomal protein S21
2983	 52.35	0	3365338..3367083	+	581	74313601	dnaG	SSON_3203	-	DNA primase
2984	 53.04	0	3367278..3369119	+	613