IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2955	 51.48	0	3331624..3333105	+	493	161986452	tolC	SSON_3173	-	outer membrane channel protein
2956	 56.40	+1	3333253..3333924	+	223	161986451	ygiB	SSON_3174	-	hypothetical protein
2957	 50.22	0	3333930..3335090	+	386	74313575	ygiC	SSON_3175	-	putative synthetase/amidase
2958	 53.31	0	3335128..3335943	-	271	74313576	ygiD	SSON_3176	-	hypothetical protein
2959	 53.23	0	3336059..3336832	+	257	74313577	ygiE	SSON_3177	-	zinc transporter ZupT
2960	 52.75	0	3337321..3337974	-	217	74313578	ribB	SSON_3178	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2961	 48.15	0	3338288..3338638	+	116	74313579	-	SSON_3179	-	hypothetical protein
2962	 44.38	-1	3338921..3339472	+	183	74313580	ygiL	SSON_3180	-	putative fimbrial protein
2963	 55.19	0	3340648..3341553	-	301	161986450	-	SSON_3182	-	insertion element IS2 transposase InsD
2964	 39.00	-2	3342966..3343724	+	252	74313582	yqiH	SSON_3183	-	hypothetical protein
2965	 39.34	-2	3343726..3344790	+	354	74313583	yqiI	SSON_3184	-	hypothetical protein
2966	 52.81	0	3344810..3345841	-	343	74313584	-	SSON_3185	-	IS630 orf
2967	 45.27	-1	3345988..3346188	-	66	74313585	glgS	SSON_3186	-	glycogen synthesis protein GlgS
2968	 42.38	-2	3346457..3347086	+	209	74313586	-	SSON_3187	-	putative oxidoreductase
2969	 50.12	0	3347113..3348774	+	553	74313587	-	SSON_3188	-	hypothetical protein
2970	 56.62	+1	3349568..3351001	-	477