IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2699	 54.48	0	3037636..3039063	-	475	74313317	cysN	SSON_2899	-	sulfate adenylyltransferase subunit 1
2700	 53.36	0	3039065..3039973	-	302	74313318	cysD	SSON_2900	-	sulfate adenylyltransferase subunit 2
2701	 49.04	0	3040225..3041262	+	345	74313319	iap	SSON_2901	-	alkaline phosphatase isozyme conversion aminopeptidase
2702	 48.30	0	3041530..3041823	-	97	74313320	ygbF	SSON_2902	-	hypothetical protein
2703	 56.05	+1	3042740..3043144	-	134	74313321	ygcH	SSON_2904	-	putative cytoplasmic protein
2704	 57.73	+1	3043455..3044651	+	398	74313322	-	SSON_2905	-	ISSfl2 ORF
2705	 53.68	0	3044822..3045568	-	248	74313323	-	SSON_2906	-	putative cytoplasmic protein
2706	 49.43	0	3045579..3046634	-	351	74313324	yghJ	SSON_2907	-	putative cytoplasmic protein
2707	 53.26	0	3046646..3046906	-	86	74313325	-	SSON_2908	-	hypothetical protein
2708	 46.20	-1	3047037..3047339	+	100	74313326	-	SSON_2909	-	IS600 ORF1
2709	 52.10	0	3047480..3048193	+	237	74313327	-	SSON_2910	-	IS600 ORF2
2710	 51.39	0	3048234..3048449	-	71	74313328	-	SSON_2911	-	hypothetical protein
2711	 45.76	-1	3048446..3048775	-	109	74313329	-	SSON_2912	-	hypothetical protein
2712	 51.52	0	3048793..3050007	-	404	74313330	-	SSON_2913	-	putative cytoplasmic protein
2713	 50.79	0	3050105..3052762	-	885	74313331	ygcB	SSON_2914	-	putative helicase
2714	 50.20	0	3053416..3054150	-	244