IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2688	 51.87	0	3028745..3030109	+	454	74313306	-	SSON_2888	-	inner membrane permease YgbN
2689	 51.86	0	3030203..3031195	-	330	74313307	rpoS	SSON_2889	-	RNA polymerase sigma factor RpoS
2690	 52.28	0	3031258..3032397	-	379	74313308	nlpD	SSON_2890	-	lipoprotein NlpD
2691	 53.59	0	3032537..3033163	-	208	74313309	pcm	SSON_2891	-	protein-L-isoaspartate O-methyltransferase
2692	 55.12	0	3033157..3033918	-	253	74313310	surE	SSON_2892	-	stationary phase survival protein SurE
2693	 52.10	0	3033899..3034948	-	349	74313311	truD	SSON_2893	-	tRNA pseudouridine synthase D
2694	 53.75	0	3034945..3035424	-	159	74313312	ispF	SSON_2894	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2695	 55.27	0	3035424..3036134	-	236	74313313	ispD	SSON_2895	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2696	 51.92	0	3036153..3036464	-	103	74313314	ftsB	SSON_2896	-	cell division protein FtsB
2697	 48.15	0	3036658..3036981	-	107	74313315	ygbE	SSON_2897	-	hypothetical protein
2698	 51.98	0	3037031..3037636	-	201	74313316	cysC	SSON_2898	-	adenylylsulfate kinase
2699	 54.48	0	3037636..3039063	-	475	74313317	cysN	SSON_2899	-	sulfate adenylyltransferase subunit 1
2700	 53.36	0	3039065..3039973	-	302	74313318	cysD	SSON_2900	-	sulfate adenylyltransferase subunit 2
2701	 49.04	0	3040225..3041262	+	345	74313319	iap	SSON_2901	-	alkaline phosphatase isozyme conversion aminopeptidase
2702	 48.30	0	3041530..3041823	-	97	74313320	ygbF	SSON_2902	-	hypo