IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2679	 57.17	+1	3016163..3017131	+	322	74313297	hypE	SSON_2877	-	hypothetical protein
2680	 50.56	0	3019319..3019672	-	117	74313298	ygbA	SSON_2879	-	hypothetical protein
2681	 56.48	+1	3019959..3022520	+	853	74313299	mutS	SSON_2880	-	DNA mismatch repair protein
2682	 54.17	0	3023059..3023562	-	167	74313300	-	SSON_2882	-	IS1 ORF
2683	 51.50	0	3024110..3024907	-	265	74313301	ygbI	SSON_2883	-	putative DEOR-type transcriptional regulator
2684	 53.25	0	3025073..3025981	+	302	74313302	-	SSON_2884	-	putative dehydrogenase
2685	 54.87	0	3025978..3027240	+	420	74313303	-	SSON_2885	-	hypothetical protein
2686	 53.52	0	3027237..3027875	+	212	74313304	ygbL	SSON_2886	-	putative aldolase
2687	 51.35	0	3027880..3028656	+	258	74313305	ygbM	SSON_2887	-	hypothetical protein
2688	 51.87	0	3028745..3030109	+	454	74313306	-	SSON_2888	-	inner membrane permease YgbN
2689	 51.86	0	3030203..3031195	-	330	74313307	rpoS	SSON_2889	-	RNA polymerase sigma factor RpoS
2690	 52.28	0	3031258..3032397	-	379	74313308	nlpD	SSON_2890	-	lipoprotein NlpD
2691	 53.59	0	3032537..3033163	-	208	74313309	pcm	SSON_2891	-	protein-L-isoaspartate O-methyltransferase
2692	 55.12	0	3033157..3033918	-	253	74313310	surE	SSON_2892	-	stationary phase survival protein SurE
2693	 52.10	0	3033899..3034948	-	349	74313311	truD	SSON_2893	-	tRNA pseudouridine synthase D
2694	 53.75	0	3034945..3035424	-	159