version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2668 56.64 +1 3006322..3007089 - 255 74313286 hycG SSON_2866 - hydrogenase activity 2669 55.99 +1 3007089..3007631 - 180 74313287 hycF SSON_2867 - formate hydrogenlyase complex iron-sulfur subunit 2670 57.07 +1 3007641..3009338 - 565 74313288 hycE SSON_2868 - large subunit of hydrogenase 3 2671 58.33 +1 3009356..3010279 - 307 74313289 hycD SSON_2869 - membrane-spanning protein of hydrogenase 3 (part of FHL complex) 2672 57.74 +1 3010282..3012108 - 608 74313290 hycC SSON_2870 - formate hydrogenlyase subunit 3 2673 56.37 +1 3012105..3012716 - 203 74313291 hycB SSON_2871 - small subunit of hydrogenase-3, iron-sulfur protein 2674 49.78 0 3012841..3013302 - 153 74313292 hycA SSON_2872 - formate hydrogenlyase regulatory protein HycA 2675 52.71 0 3013514..3013864 + 116 74313293 hypA SSON_2873 - hydrogenase nickel incorporation protein 2676 55.56 0 3013868..3014740 + 290 74313294 hypB SSON_2874 - hydrogenase nickel incorporation protein HypB 2677 54.95 0 3014731..3015003 + 90 74313295 hypC SSON_2875 - hydrogenase isoenzymes formation protein 2678 55.17 0 3015003..3016124 + 373 74313296 hypD SSON_2876 - pleiotrophic effects on 3 hydrogenase isozymes 2679 57.17 +1 3016163..3017131 + 322 74313297 hypE SSON_2877 - hypothetical protein 2680 50.56 0 3019319..3019672 - 117 74313298 ygbA SSON_2879 - hypothetical protein 2681 56.48 +1 3019959..3022520 + 853 74313299 mutS SSON_2880 - DNA mismatch repair protein 2682 54.17 0 3023059..3023562 - 167 74313300 - SSON_2882 - IS1 ORF 2683 51.50 0 3024110..3024907 - 265 74313301 ygbI SSON_2883 - putative DEOR-type transcriptional regulator 2684 53.25 0 3025073..3025981 + 302 74313302 - SSON_2884 - putative dehydrogenase 2685 54.87 0 3025978..3027240 + 420 74313303 - SSON_2885 - hypothetical protein 2686 53.52 0 3027237..3027875 + 212 74313304 ygbL SSON_2886 - putative aldolase 2687 51.35 0 3027880..3028656 + 258 74313305 ygbM SSON_2887 - hypothetical protein 2688 51.87 0 3028745..3030109 + 454 74313306 - SSON_2888 - inner membrane permease YgbN 2689 51.86 0 3030203..3031195 - 330 74313307 rpoS SSON_2889 - RNA polymerase sigma factor RpoS 2690 52.28 0 3031258..3032397 - 379 74313308 nlpD SSON_2890 - lipoprotein NlpD 2691 53.59 0 3032537..3033163 - 208 74313309 pcm SSON_2891 - protein-L-isoaspartate O-methyltransferase 2692 55.12 0 3033157..3033918 - 253 74313310 surE SSON_2892 - stationary phase survival protein SurE 2693 52.10 0 3033899..3034948 - 349 74313311 truD SSON_2893 - tRNA pseudouridine synthase D 2694 53.75 0 3034945..3035424 - 159 74313312 ispF SSON_2894 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2695 55.27 0 3035424..3036134 - 236 74313313 ispD SSON_2895 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2696 51.92 0 3036153..3036464 - 103 74313314 ftsB SSON_2896 - cell division protein FtsB 2697 48.15 0 3036658..3036981 - 107 74313315 ygbE SSON_2897 - hypothetical protein 2698 51.98 0 3037031..3037636 - 201 74313316 cysC SSON_2898 - adenylylsulfate kinase 2699 54.48 0 3037636..3039063 - 475 74313317 cysN SSON_2899 - sulfate adenylyltransferase subunit 1 2700 53.36 0 3039065..3039973 - 302 74313318 cysD SSON_2900 - sulfate adenylyltransferase subunit 2 2701 49.04 0 3040225..3041262 + 345 74313319 iap SSON_2901 - alkaline phosphatase isozyme conversion aminopeptidase 2702 48.30 0 3041530..3041823 - 97 74313320 ygbF SSON_2902 - hypothetical protein 2703 56.05 +1 3042740..3043144 - 134 74313321 ygcH SSON_2904 - putative cytoplasmic protein 2704 57.73 +1 3043455..3044651 + 398 74313322 - SSON_2905 - ISSfl2 ORF 2705 53.68 0 3044822..3045568 - 248 74313323 - SSON_2906 - putative cytoplasmic protein 2706 49.43 0 3045579..3046634 - 351 74313324 yghJ SSON_2907 - putative cytoplasmic protein 2707 53.26 0 3046646..3046906 - 86 74313325 - SSON_2908 - hypothetical protein 2708 46.20 -1 3047037..3047339 + 100 74313326 - SSON_2909 - IS600 ORF1 2709 52.10 0 3047480..3048193 + 237 74313327 - SSON_2910 - IS600 ORF2 2710 51.39 0 3048234..3048449 - 71 74313328 - SSON_2911 - hypothetical protein 2711 45.76 -1 3048446..3048775 - 109 74313329 - SSON_2912 - hypothetical protein 2712 51.52 0 3048793..3050007 - 404 74313330 - SSON_2913 - putative cytoplasmic protein 2713 50.79 0 3050105..3052762 - 885 74313331 ygcB SSON_2914 - putative helicase 2714 50.20 0 3053416..3054150 - 244 74313332 cysH SSON_2915 - phosphoadenosine phosphosulfate reductase 2715 56.04 +1 3054225..3055937 - 570 74313333 cysI SSON_2916 - sulfite reductase subunit beta 2716 56.83 +1 3055937..3057736 - 599 74313334 cysJ SSON_2917 - sulfite reductase subunit alpha 2717 49.45 0 3058052..3058417 + 121 74313335 ygcM SSON_2918 - putative 6-pyruvoyl tetrahydrobiopterin synthase 2718 55.07 0 3058465..3059766 + 433 74313336 ygcN SSON_2919 - hypothetical protein 2719 55.89 +1 3059721..3060017 + 98 74313337 ygcO SSON_2920 - hypothetical protein 2720 46.70 -1 3060034..3060609 + 191 74313338 ygcP SSON_2921 - putative anti-terminator regulatory protein 2721 55.37 0 3060757..3061650 - 297 74313339 ygcQ SSON_2922 - putative flavoprotein 2722 55.73 0 3061614..3062399 - 261 74313340 ygcR SSON_2923 - putative transport protein 2723 53.19 0 3062371..3063780 - 469 74313341 ygcS SSON_2924 - putative transport protein 2724 50.82 0 3063802..3064596 - 264 74313342 - SSON_2925 - hypothetical protein 2725 49.53 0 3066460..3067737 + 425 74313343 yqcE SSON_2927 - putative transport protein 2726 54.37 0 3069449..3069952 - 167 74313344 - SSON_2929 - IS1 ORF 2727 51.64 0 3070990..3071661 - 223 74313345 ygcF SSON_2930 - hypothetical protein 2728 46.20 -1 3071962..3072264 + 100 74313346 - SSON_2931 - IS600 ORF1 2729 51.96 0 3072405..3073118 + 237 74313347 - SSON_2932 - IS600 ORF2 2730 38.13 -2 3073221..3073970 + 249 74313348 ygcG SSON_2933 - hypothetical protein 2731 54.37 0 3073981..3074484 - 167 74313349 - SSON_2934 - IS1 ORF 2732 53.90 0 3074969..3076315 + 448 74313350 - SSON_2935 - IS4 orf 2733 50.50 0 3076370..3077668 - 432 74313351 eno SSON_2936 - phosphopyruvate hydratase 2734 51.71 0 3077756..3079393 - 545 74313352 pyrG SSON_2937 - CTP synthetase 2735 51.26 0 3079621..3080412 - 263 74313353 mazG SSON_2938 - nucleoside triphosphate pyrophosphohydrolase 2736 46.13 -1 3080483..3080818 - 111 74313354 chpA SSON_2939 - toxin ChpA 2737 48.59 0 3080818..3081066 - 82 74313355 chpR SSON_2940 - antitoxin MazE 2738 53.56 0 3081144..3083378 - 744 74313356 relA SSON_2941 - GDP/GTP pyrophosphokinase 2739 51.23 0 3083426..3084727 - 433 74313357 rumA SSON_2942 - 23S rRNA 5-methyluridine methyltransferase 2740 50.02 0 3084784..3087540 + 918 74313358 barA SSON_2943 - hybrid sensory histidine kinase BarA 2741 53.02 0 3087772..3089112 - 446 74313359 ygcX SSON_2944 - putative glucarate dehydratase 2742 53.84 0 3089133..3090473 - 446 74313360 ygcY SSON_2945 - putative glucarate dehydratase 2743 52.11 0 3090475..3091827 - 450 74313361 - SSON_2946 - putative transport protein 2744 52.00 0 3092262..3092711 - 149 74313362 - SSON_2947 - flavodoxin 2745 53.77 0 3092729..3093511 - 260 74313363 yqcB SSON_2948 - tRNA pseudouridine synthase C 2746 51.52 0 3093511..3093840 - 109 74313364 - SSON_2949 - hypothetical protein 2747 47.99 0 3094462..3095007 - 181 74313365 syd SSON_2950 - SecY interacting protein Syd 2748 48.76 0 3095075..3095923 + 282 74313366 queF SSON_2951 - 7-cyano-7-deazaguanine reductase 2749 51.36 0 3096035..3097399 + 454 74313367 ygdH SSON_2952 - hypothetical protein 2750 52.02 0 3097955..3099244 + 429 74313368 sdaC SSON_2953 - serine transporter 2751 54.46 0 3099302..3100669 + 455 74313369 sdaB SSON_2954 - L-serine dehydratase 2752 52.60 0 3100691..3101536 + 281 74313370 xni SSON_2955 - exonuclease IX 2753 53.47 0 3101641..3102792 - 383 74313371 fucO SSON_2956 - L-1,2-propanediol oxidoreductase 2754 49.38 0 3102817..3103464 - 215 74313372 fucA SSON_2957 - L-fuculose phosphate aldolase 2755 47.46 0 3104011..3105327 + 438 74313373 fucP SSON_2958 - L-fucose transporter 2756 50.66 0 3107214..3108662 + 482 74313374 fucK SSON_2960 - L-fuculokinase 2757 48.70 0 3108664..3109086 + 140 74313375 fucU SSON_2961 - protein of fucose operon 2758 48.22 0 3109144..3109875 + 243 74313376 fucR SSON_2962 - DNA-binding transcriptional activator FucR 2759 52.32 0 3109919..3111019 - 366 74313377 ygdE SSON_2963 - putative RNA 2'-O-ribose methyltransferase 2760 54.29 0 3111012..3111407 - 131 74313378 ygdD SSON_2964 - hypothetical protein 2761 49.46 0 3111426..3112343 - 305 74313379 gcvA SSON_2965 - DNA-binding transcriptional activator GcvA 2762 46.32 -1 3112694..3112924 - 76 74313380 - SSON_2966 - hypothetical protein 2763 55.89 +1 3113113..3114318 + 401 74313381 - SSON_2967 - cysteine sulfinate desulfinase 2764 54.95 0 3114318..3114761 + 147 74313382 ygdK SSON_2968 - hypothetical protein 2765 55.02 0 3114812..3115618 - 268 74313383 ygdL SSON_2969 - putative enzyme 2766 52.82 0 3115695..3116792 - 365 74313384 mltA SSON_2970 - murein transglycosylase A 2767 52.60 0 3117372..3118715 - 447 74313385 - SSON_2974 - putative amidase 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0