IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2667	 52.80	0	3005915..3006325	-	136	74313285	hycH	SSON_2865	-	HycH
2668	 56.64	+1	3006322..3007089	-	255	74313286	hycG	SSON_2866	-	hydrogenase activity
2669	 55.99	+1	3007089..3007631	-	180	74313287	hycF	SSON_2867	-	formate hydrogenlyase complex iron-sulfur subunit
2670	 57.07	+1	3007641..3009338	-	565	74313288	hycE	SSON_2868	-	large subunit of hydrogenase 3
2671	 58.33	+1	3009356..3010279	-	307	74313289	hycD	SSON_2869	-	membrane-spanning protein of hydrogenase 3 (part of FHL complex)
2672	 57.74	+1	3010282..3012108	-	608	74313290	hycC	SSON_2870	-	formate hydrogenlyase subunit 3
2673	 56.37	+1	3012105..3012716	-	203	74313291	hycB	SSON_2871	-	small subunit of hydrogenase-3, iron-sulfur protein
2674	 49.78	0	3012841..3013302	-	153	74313292	hycA	SSON_2872	-	formate hydrogenlyase regulatory protein HycA
2675	 52.71	0	3013514..3013864	+	116	74313293	hypA	SSON_2873	-	hydrogenase nickel incorporation protein
2676	 55.56	0	3013868..3014740	+	290	74313294	hypB	SSON_2874	-	hydrogenase nickel incorporation protein HypB
2677	 54.95	0	3014731..3015003	+	90	74313295	hypC	SSON_2875	-	hydrogenase isoenzymes formation protein
2678	 55.17	0	3015003..3016124	+	373	74313296	hypD	SSON_2876	-	pleiotrophic effects on 3 hydrogenase isozymes
2679	 57.17	+1	3016163..3017131	+	322	74313297	hypE	SSON_2877	-	hypothetical protein
2680	 50.56	0	3019319..3019672	-	117	74313298	ygbA	SSON_2879	-	hypothetical protein
2681	 56.48	+1	3019959..3022520	+	853	743132