IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2644	 53.67	0	2980471..2983101	-	876	74313262	alaS	SSON_2841	-	alanyl-tRNA synthetase
2645	 50.70	0	2983229..2983729	-	166	74313263	recX	SSON_2842	-	recombination regulator RecX
2646	 53.86	0	2983957..2985018	-	353	74313264	recA	SSON_2843	-	recombinase A
2647	 56.63	+1	2985098..2985595	-	165	74313265	ygaD	SSON_2844	-	competence damage-inducible protein A
2648	 55.06	0	2985740..2986825	-	361	74313266	mltB	SSON_2845	-	murein hydrolase B
2649	 50.18	0	2987081..2987644	+	187	74313267	srlA	SSON_2846	-	PTS system, glucitol/sorbitol-specific IIC component, one of two
2650	 54.69	0	2987641..2988600	+	319	74313268	srlE	SSON_2847	-	PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components
2651	 55.65	0	2988611..2988982	+	123	74313269	srlB	SSON_2848	-	glucitol/sorbitol-specific PTS system component IIA
2652	 54.44	0	2989859..2990218	+	119	74313270	gutM	SSON_2850	-	DNA-binding transcriptional activator GutM
2653	 47.93	0	2990285..2991058	+	257	74313271	srlR	SSON_2851	-	DNA-bindng transcriptional repressor SrlR
2654	 56.94	+1	2991051..2992016	+	321	161986464	gutQ	SSON_2852	-	D-arabinose 5-phosphate isomerase
2655	 56.90	+1	2992013..2993527	-	504	161986463	ygaA	SSON_2853	-	anaerobic nitric oxide reductase transcription regulator
2656	 53.19	0	2993714..2995153	+	479	74313274	-	SSON_2854	-	anaerobic nitric oxide reductase flavorubredoxin
2657	 54.23	0	2995150..2996283	+	377	74313275	ygbD	SSON_2855	-	nitric oxide reductase
2658	 57.92	+1	2996411..2998663	-	750