IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2609	 54.37	0	2944845..2945348	+	167	74313227	-	SSON_2799	-	IS1 ORF
2610	 54.37	0	2945809..2946312	-	167	74313228	-	SSON_2801	-	IS1 ORF
2611	 38.22	-2	2946772..2948325	+	517	74313229	-	SSON_2802	-	putative enzyme
2612	 53.17	0	2948661..2949638	+	325	161986466	-	SSON_2803	-	hypothetical protein
2613	 57.15	+1	2949592..2950926	+	444	74313231	ygaF	SSON_2804	-	hypothetical protein
2614	 57.35	+1	2950949..2952397	+	482	74313232	gabD	SSON_2805	-	succinate-semialdehyde dehydrogenase I
2615	 59.25	+1	2952411..2953691	+	426	74313233	gabT	SSON_2806	-	4-aminobutyrate aminotransferase
2616	 51.94	0	2954002..2955318	+	438	74313234	gabP	SSON_2807	-	transport permease protein of gamma-aminobutyrate
2617	 53.39	0	2955339..2956001	+	220	161986465	ygaE	SSON_2808	-	DNA-binding transcriptional regulator CsiR
2618	 48.22	0	2956002..2956451	-	149	74313236	ygaU	SSON_2809	-	hypothetical protein
2619	 50.94	0	2956535..2956693	-	52	74313237	-	SSON_2810	-	hypothetical protein
2620	 52.67	0	2956876..2957175	+	99	74313238	-	SSON_2811	-	hypothetical protein
2621	 46.29	-1	2957185..2957709	+	174	74313239	ygaP	SSON_2812	-	hypothetical protein
2622	 48.15	0	2957756..2958160	-	134	74313240	stpA	SSON_2813	-	DNA binding protein, nucleoid-associated
2623	 57.73	+1	2958675..2959871	+	398	74313241	-	SSON_2814	-	ISSfl2 ORF
2624	 48.67	0	2960280..2960729	+	149