version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2586 49.94 0 2923169..2924047 + 292 74313204 ppnK SSON_2771 - inorganic polyphosphate/ATP-NAD kinase 2587 51.74 0 2924133..2925794 + 553 74313205 recN SSON_2772 - recombination and repair protein 2588 49.71 0 2925943..2926284 + 113 161986469 smpA SSON_2773 - hypothetical protein 2589 49.07 0 2926343..2926666 - 107 74313207 - SSON_2774 - IS4 orf 2590 55.19 0 2927053..2927958 + 301 161986468 - SSON_2775 - insertion element IS2 transposase InsD 2591 54.86 0 2927883..2929025 - 380 74313209 - SSON_2776 - IS4 orf 2592 54.62 0 2929075..2930319 - 414 74313210 - SSON_2777 - putative portal protein 2593 60.66 +2 2930231..2930413 - 60 74313211 ymfR SSON_2778 - hypothetical protein 2594 54.21 0 2930425..2932158 - 577 74313212 ymfN SSON_2779 - hypothetical protein 2595 58.59 +1 2932155..2932649 - 164 74313213 - SSON_2780 - hypothetical protein 2596 57.55 +1 2932771..2933121 - 116 74313214 - SSON_2781 - putative DNase 2597 52.04 0 2933164..2933628 - 154 74313215 ybcT SSON_2782 - endopeptidase-like protein 2598 49.60 0 2933625..2934122 - 165 74313216 ybcS SSON_2783 - lysozyme-like protein 2599 48.61 0 2934122..2934337 - 71 74313217 - SSON_2784 - lysis protein S 2600 46.72 -1 2935518..2936279 - 253 74313218 - SSON_2789 - putative bacteriophage protein 2601 47.03 -1 2936562..2936948 - 128 74313219 - SSON_2790 - antitermination protein Q-like protein 2602 50.54 0 2936938..2937309 - 123 74313220 - SSON_2791 - putative endonuclease 2603 48.45 0 2937309..2937566 - 85 74313221 - SSON_2792 - putative bacteriophage protein 2604 52.64 0 2937563..2939095 - 510 74313222 - SSON_2793 - putative helicase 2605 55.08 0 2939070..2939975 - 301 161986467 - SSON_2794 - insertion element IS2 transposase InsD 2606 52.73 0 2939933..2940298 - 121 74313224 - SSON_2795 - insertion sequence 2 OrfA protein 2607 44.44 -1 2942092..2942235 - 47 74313225 - SSON_2797 - hypothetical protein 2608 34.42 -2 2942664..2944142 - 492 74313226 - SSON_2798 - hypothetical protein 2609 54.37 0 2944845..2945348 + 167 74313227 - SSON_2799 - IS1 ORF 2610 54.37 0 2945809..2946312 - 167 74313228 - SSON_2801 - IS1 ORF 2611 38.22 -2 2946772..2948325 + 517 74313229 - SSON_2802 - putative enzyme 2612 53.17 0 2948661..2949638 + 325 161986466 - SSON_2803 - hypothetical protein 2613 57.15 +1 2949592..2950926 + 444 74313231 ygaF SSON_2804 - hypothetical protein 2614 57.35 +1 2950949..2952397 + 482 74313232 gabD SSON_2805 - succinate-semialdehyde dehydrogenase I 2615 59.25 +1 2952411..2953691 + 426 74313233 gabT SSON_2806 - 4-aminobutyrate aminotransferase 2616 51.94 0 2954002..2955318 + 438 74313234 gabP SSON_2807 - transport permease protein of gamma-aminobutyrate 2617 53.39 0 2955339..2956001 + 220 161986465 ygaE SSON_2808 - DNA-binding transcriptional regulator CsiR 2618 48.22 0 2956002..2956451 - 149 74313236 ygaU SSON_2809 - hypothetical protein 2619 50.94 0 2956535..2956693 - 52 74313237 - SSON_2810 - hypothetical protein 2620 52.67 0 2956876..2957175 + 99 74313238 - SSON_2811 - hypothetical protein 2621 46.29 -1 2957185..2957709 + 174 74313239 ygaP SSON_2812 - hypothetical protein 2622 48.15 0 2957756..2958160 - 134 74313240 stpA SSON_2813 - DNA binding protein, nucleoid-associated 2623 57.73 +1 2958675..2959871 + 398 74313241 - SSON_2814 - ISSfl2 ORF 2624 48.67 0 2960280..2960729 + 149 74313242 - SSON_2815 - hypothetical protein 2625 46.09 -1 2960766..2961110 - 114 74313243 ygaC SSON_2816 - hypothetical protein 2626 53.51 0 2961250..2961591 + 113 74313244 ygaM SSON_2817 - hypothetical protein 2627 53.25 0 2961839..2962084 + 81 74313245 nrdH SSON_2818 - glutaredoxin-like protein 2628 52.35 0 2962464..2964608 + 714 74313246 nrdE SSON_2820 - ribonucleotide-diphosphate reductase subunit alpha 2629 48.12 0 2964618..2965577 + 319 74313247 nrdF SSON_2821 - ribonucleotide-diphosphate reductase subunit beta 2630 48.79 0 2965933..2967135 + 400 74313248 proV SSON_2822 - glycine betaine transporter ATP-binding subunit 2631 58.12 +1 2967128..2968192 + 354 74313249 proW SSON_2823 - glycine betaine transporter membrane protein 2632 52.27 0 2968250..2969242 + 330 74313250 proX SSON_2824 - glycine betaine transporter periplasmic subunit 2633 54.77 0 2969533..2970717 + 394 74313251 - SSON_2825 - permease 2634 52.57 0 2970841..2971578 + 245 74313252 - SSON_2826 - hypothetical protein 2635 55.36 0 2971568..2971903 + 111 74313253 ygaH SSON_2827 - hypothetical protein 2636 49.15 0 2971994..2972524 + 176 74313254 emrR SSON_2828 - transcriptional repressor MprA 2637 53.11 0 2972651..2973823 + 390 74313255 emrA SSON_2829 - multidrug resistance secretion protein 2638 56.47 +1 2973840..2975378 + 512 74313256 emrB SSON_2830 - membrane translocase 2639 51.55 0 2975442..2975957 - 171 74313257 ygaG SSON_2831 - S-ribosylhomocysteinase 2640 51.25 0 2976107..2977663 - 518 74313258 gshA SSON_2832 - glutamate--cysteine ligase 2641 49.18 0 2977736..2978164 - 142 74313259 - SSON_2833 - hypothetical protein 2642 53.44 0 2978161..2978727 - 188 74313260 yqaB SSON_2834 - fructose-1-phosphatase 2643 49.46 0 2980051..2980236 - 61 74313261 csrA SSON_2840 - carbon storage regulator 2644 53.67 0 2980471..2983101 - 876 74313262 alaS SSON_2841 - alanyl-tRNA synthetase 2645 50.70 0 2983229..2983729 - 166 74313263 recX SSON_2842 - recombination regulator RecX 2646 53.86 0 2983957..2985018 - 353 74313264 recA SSON_2843 - recombinase A 2647 56.63 +1 2985098..2985595 - 165 74313265 ygaD SSON_2844 - competence damage-inducible protein A 2648 55.06 0 2985740..2986825 - 361 74313266 mltB SSON_2845 - murein hydrolase B 2649 50.18 0 2987081..2987644 + 187 74313267 srlA SSON_2846 - PTS system, glucitol/sorbitol-specific IIC component, one of two 2650 54.69 0 2987641..2988600 + 319 74313268 srlE SSON_2847 - PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components 2651 55.65 0 2988611..2988982 + 123 74313269 srlB SSON_2848 - glucitol/sorbitol-specific PTS system component IIA 2652 54.44 0 2989859..2990218 + 119 74313270 gutM SSON_2850 - DNA-binding transcriptional activator GutM 2653 47.93 0 2990285..2991058 + 257 74313271 srlR SSON_2851 - DNA-bindng transcriptional repressor SrlR 2654 56.94 +1 2991051..2992016 + 321 161986464 gutQ SSON_2852 - D-arabinose 5-phosphate isomerase 2655 56.90 +1 2992013..2993527 - 504 161986463 ygaA SSON_2853 - anaerobic nitric oxide reductase transcription regulator 2656 53.19 0 2993714..2995153 + 479 74313274 - SSON_2854 - anaerobic nitric oxide reductase flavorubredoxin 2657 54.23 0 2995150..2996283 + 377 74313275 ygbD SSON_2855 - nitric oxide reductase 2658 57.92 +1 2996411..2998663 - 750 74313276 hypF SSON_2856 - transcriptional regulatory protein 2659 52.08 0 2998816..2999343 - 175 74313277 hydN SSON_2857 - electron transport protein HydN 2660 52.86 0 2999491..3000504 - 337 74313278 ascG SSON_2858 - ascBF operon repressor 2661 56.38 +1 3000761..3002218 + 485 74313279 ascF SSON_2859 - cellobiose/arbutin/salicin-specific PTS system components IIBC 2662 52.14 0 3002227..3003651 + 474 74313280 ascB SSON_2860 - cryptic 6-phospho-beta-glucosidase 2663 46.43 -1 3003765..3004184 - 139 74313281 - SSON_2861 - hypothetical protein 2664 42.31 -2 3004181..3004492 - 103 74313282 - SSON_2862 - putative cytoplasmic protein 2665 50.65 0 3004654..3005427 - 257 74313283 - SSON_2863 - putative periplasmic or exported protein 2666 53.08 0 3005452..3005922 - 156 74313284 hycI SSON_2864 - hydrogenase 3 maturation protease 2667 52.80 0 3005915..3006325 - 136 74313285 hycH SSON_2865 - HycH 2668 56.64 +1 3006322..3007089 - 255 74313286 hycG SSON_2866 - hydrogenase activity 2669 55.99 +1 3007089..3007631 - 180 74313287 hycF SSON_2867 - formate hydrogenlyase complex iron-sulfur subunit 2670 57.07 +1 3007641..3009338 - 565 74313288 hycE SSON_2868 - large subunit of hydrogenase 3 2671 58.33 +1 3009356..3010279 - 307 74313289 hycD SSON_2869 - membrane-spanning protein of hydrogenase 3 (part of FHL complex) 2672 57.74 +1 3010282..3012108 - 608 74313290 hycC SSON_2870 - formate hydrogenlyase subunit 3 2673 56.37 +1 3012105..3012716 - 203 74313291 hycB SSON_2871 - small subunit of hydrogenase-3, iron-sulfur protein 2674 49.78 0 3012841..3013302 - 153 74313292 hycA SSON_2872 - formate hydrogenlyase regulatory protein HycA 2675 52.71 0 3013514..3013864 + 116 74313293 hypA SSON_2873 - hydrogenase nickel incorporation protein 2676 55.56 0 3013868..3014740 + 290 74313294 hypB SSON_2874 - hydrogenase nickel incorporation protein HypB 2677 54.95 0 3014731..3015003 + 90 74313295 hypC SSON_2875 - hydrogenase isoenzymes formation protein 2678 55.17 0 3015003..3016124 + 373 74313296 hypD SSON_2876 - pleiotrophic effects on 3 hydrogenase isozymes 2679 57.17 +1 3016163..3017131 + 322 74313297 hypE SSON_2877 - hypothetical protein 2680 50.56 0 3019319..3019672 - 117 74313298 ygbA SSON_2879 - hypothetical protein 2681 56.48 +1 3019959..3022520 + 853 74313299 mutS SSON_2880 - DNA mismatch repair protein 2682 54.17 0 3023059..3023562 - 167 74313300 - SSON_2882 - IS1 ORF 2683 51.50 0 3024110..3024907 - 265 74313301 ygbI SSON_2883 - putative DEOR-type transcriptional regulator 2684 53.25 0 3025073..3025981 + 302 74313302 - SSON_2884 - putative dehydrogenase 2685 54.87 0 3025978..3027240 + 420 74313303 - SSON_2885 - hypothetical protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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