IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2586	 49.94	0	2923169..2924047	+	292	74313204	ppnK	SSON_2771	-	inorganic polyphosphate/ATP-NAD kinase
2587	 51.74	0	2924133..2925794	+	553	74313205	recN	SSON_2772	-	recombination and repair protein
2588	 49.71	0	2925943..2926284	+	113	161986469	smpA	SSON_2773	-	hypothetical protein
2589	 49.07	0	2926343..2926666	-	107	74313207	-	SSON_2774	-	IS4 orf
2590	 55.19	0	2927053..2927958	+	301	161986468	-	SSON_2775	-	insertion element IS2 transposase InsD
2591	 54.86	0	2927883..2929025	-	380	74313209	-	SSON_2776	-	IS4 orf
2592	 54.62	0	2929075..2930319	-	414	74313210	-	SSON_2777	-	putative portal protein
2593	 60.66	+2	2930231..2930413	-	60	74313211	ymfR	SSON_2778	-	hypothetical protein
2594	 54.21	0	2930425..2932158	-	577	74313212	ymfN	SSON_2779	-	hypothetical protein
2595	 58.59	+1	2932155..2932649	-	164	74313213	-	SSON_2780	-	hypothetical protein
2596	 57.55	+1	2932771..2933121	-	116	74313214	-	SSON_2781	-	putative DNase
2597	 52.04	0	2933164..2933628	-	154	74313215	ybcT	SSON_2782	-	endopeptidase-like protein
2598	 49.60	0	2933625..2934122	-	165	74313216	ybcS	SSON_2783	-	lysozyme-like protein
2599	 48.61	0	2934122..2934337	-	71	74313217	-	SSON_2784	-	lysis protein S
2600	 46.72	-1	2935518..2936279	-	253	74313218	-	SSON_2789	-	putative bacteriophage protein
2601	 47.03	-1	2936562..2936948	-	128