IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2553	 52.62	0	2897180..2897770	+	196	74313171	-	SSON_2738	-	putative tail protein
2554	 49.09	0	2897757..2898797	+	346	74313172	-	SSON_2739	-	putative tail fiber protein
2555	 52.27	0	2898950..2899345	+	131	74313173	-	SSON_2740	-	putative tail fiber assembly protein
2556	 53.98	0	2899471..2900637	+	388	74313174	-	SSON_2741	-	putative tail fiber protein
2557	 52.88	0	2900588..2901211	+	207	74313175	-	SSON_2742	-	hypothetical protein
2558	 51.35	0	2901987..2902469	-	160	74313176	smpB	SSON_2743	-	SsrA-binding protein
2559	 46.75	-1	2902601..2903077	+	158	74313177	-	SSON_2744	-	hypothetical protein
2560	 50.86	0	2903067..2903357	+	96	161986472	-	SSON_2745	-	hypothetical protein
2561	 53.90	0	2903451..2904797	+	448	74313179	-	SSON_2746	-	IS4 orf
2562	 36.71	-2	2904817..2905023	+	68	74313180	-	SSON_2747	-	hypothetical protein
2563	 45.91	-1	2905058..2905399	+	113	74313181	yfiA	SSON_2748	-	translation inhibitor protein RaiA
2564	 39.58	-2	2905503..2905550	+	15	74313182	pheL	SSON_2749	-	leader peptide of chorismate mutase-P-prephenate dehydratase
2565	 48.75	0	2905650..2906810	+	386	74313183	pheA	SSON_2750	-	bifunctional chorismate mutase/prephenate dehydratase
2566	 52.14	0	2906853..2907974	-	373	74313184	tyrA	SSON_2751	-	bifunctional chorismate mutase/prephenate dehydrogenase
2567	 51.73	0	2907985..2909055	-	356	74313185	aroF	SSON_2752	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2568	 47.09	-1	2909264..2909641	+	125