IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2543	 49.40	0	2888188..2888523	+	111	74313161	-	SSON_2728	-	hypothetical protein
2544	 52.05	0	2888608..2890557	+	649	74313162	-	SSON_2729	-	putative tail protein
2545	 54.37	0	2890984..2891487	+	167	74313163	-	SSON_2730	-	IS1 ORF
2546	 54.60	0	2891931..2893322	+	463	74313164	-	SSON_2731	-	tail/DNA circulation protein
2547	 54.39	0	2893319..2894401	+	360	74313165	-	SSON_2732	-	putative tail protein
2548	 53.18	0	2894379..2894912	+	177	74313166	-	SSON_2733	-	putative baseplate assembly protein
2549	 52.80	0	2894918..2895328	+	136	74313167	-	SSON_2734	-	putative tail protein
2550	 53.63	0	2895321..2895995	+	224	74313168	-	SSON_2735	-	putative head assembly protein
2551	 54.37	0	2895930..2896433	-	167	74313169	-	SSON_2736	-	IS1 ORF
2552	 53.94	0	2896788..2897180	+	130	74313170	-	SSON_2737	-	putative tail protein
2553	 52.62	0	2897180..2897770	+	196	74313171	-	SSON_2738	-	putative tail protein
2554	 49.09	0	2897757..2898797	+	346	74313172	-	SSON_2739	-	putative tail fiber protein
2555	 52.27	0	2898950..2899345	+	131	74313173	-	SSON_2740	-	putative tail fiber assembly protein
2556	 53.98	0	2899471..2900637	+	388	74313174	-	SSON_2741	-	putative tail fiber protein
2557	 52.88	0	2900588..2901211	+	207	74313175	-	SSON_2742	-	hypothetical protein
2558	 51.35	0	2901987..2902469	-	160