version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2539 46.20 -1 2885117..2885419 + 100 74313157 - SSON_2724 - IS600 ORF1 2540 52.10 0 2885560..2886273 + 237 74313158 - SSON_2725 - IS600 ORF2 2541 53.84 0 2886336..2887832 + 498 74313159 - SSON_2726 - putative sheath protein 2542 51.54 0 2887832..2888188 + 118 74313160 - SSON_2727 - hypothetical protein 2543 49.40 0 2888188..2888523 + 111 74313161 - SSON_2728 - hypothetical protein 2544 52.05 0 2888608..2890557 + 649 74313162 - SSON_2729 - putative tail protein 2545 54.37 0 2890984..2891487 + 167 74313163 - SSON_2730 - IS1 ORF 2546 54.60 0 2891931..2893322 + 463 74313164 - SSON_2731 - tail/DNA circulation protein 2547 54.39 0 2893319..2894401 + 360 74313165 - SSON_2732 - putative tail protein 2548 53.18 0 2894379..2894912 + 177 74313166 - SSON_2733 - putative baseplate assembly protein 2549 52.80 0 2894918..2895328 + 136 74313167 - SSON_2734 - putative tail protein 2550 53.63 0 2895321..2895995 + 224 74313168 - SSON_2735 - putative head assembly protein 2551 54.37 0 2895930..2896433 - 167 74313169 - SSON_2736 - IS1 ORF 2552 53.94 0 2896788..2897180 + 130 74313170 - SSON_2737 - putative tail protein 2553 52.62 0 2897180..2897770 + 196 74313171 - SSON_2738 - putative tail protein 2554 49.09 0 2897757..2898797 + 346 74313172 - SSON_2739 - putative tail fiber protein 2555 52.27 0 2898950..2899345 + 131 74313173 - SSON_2740 - putative tail fiber assembly protein 2556 53.98 0 2899471..2900637 + 388 74313174 - SSON_2741 - putative tail fiber protein 2557 52.88 0 2900588..2901211 + 207 74313175 - SSON_2742 - hypothetical protein 2558 51.35 0 2901987..2902469 - 160 74313176 smpB SSON_2743 - SsrA-binding protein 2559 46.75 -1 2902601..2903077 + 158 74313177 - SSON_2744 - hypothetical protein 2560 50.86 0 2903067..2903357 + 96 161986472 - SSON_2745 - hypothetical protein 2561 53.90 0 2903451..2904797 + 448 74313179 - SSON_2746 - IS4 orf 2562 36.71 -2 2904817..2905023 + 68 74313180 - SSON_2747 - hypothetical protein 2563 45.91 -1 2905058..2905399 + 113 74313181 yfiA SSON_2748 - translation inhibitor protein RaiA 2564 39.58 -2 2905503..2905550 + 15 74313182 pheL SSON_2749 - leader peptide of chorismate mutase-P-prephenate dehydratase 2565 48.75 0 2905650..2906810 + 386 74313183 pheA SSON_2750 - bifunctional chorismate mutase/prephenate dehydratase 2566 52.14 0 2906853..2907974 - 373 74313184 tyrA SSON_2751 - bifunctional chorismate mutase/prephenate dehydrogenase 2567 51.73 0 2907985..2909055 - 356 74313185 aroF SSON_2752 - phospho-2-dehydro-3-deoxyheptonate aldolase 2568 47.09 -1 2909264..2909641 + 125 74313186 yfiL SSON_2753 - hypothetical protein 2569 54.37 0 2909869..2910372 + 167 74313187 - SSON_2754 - IS1 ORF 2570 45.66 -1 2910556..2911074 + 172 74313188 - SSON_2755 - hypothetical protein 2571 52.10 0 2911174..2911887 - 237 74313189 - SSON_2756 - IS600 ORF2 2572 46.20 -1 2912028..2912330 - 100 74313190 - SSON_2757 - IS600 ORF1 2573 50.00 0 2912382..2912585 - 67 74313191 - SSON_2758 - IS600 ORF1 2574 53.03 0 2912866..2914038 + 390 74313192 - SSON_2759 - IS21 ORF1 2575 52.63 0 2914038..2914835 + 265 74313193 - SSON_2760 - IS21 ORF2 2576 49.33 0 2914897..2915946 + 349 74313194 yfiN SSON_2761 - hypothetical protein 2577 50.72 0 2915962..2916444 + 160 74313195 yfiB SSON_2762 - putative outer membrane lipoprotein 2578 47.99 0 2916521..2916868 - 115 74313196 rplS SSON_2763 - 50S ribosomal protein L19 2579 53.26 0 2916910..2917677 - 255 74313197 trmD SSON_2764 - tRNA (guanine-N(1)-)-methyltransferase 2580 49.00 0 2917708..2918256 - 182 161986471 rimM SSON_2765 - 16S rRNA-processing protein 2581 51.41 0 2918275..2918523 - 82 74313199 rpsP SSON_2766 - 30S ribosomal protein S16 2582 54.48 0 2918772..2920133 - 453 74313200 ffh SSON_2767 - signal recognition particle protein 2583 52.25 0 2920225..2921091 + 288 74313201 - SSON_2768 - hypothetical protein 2584 51.63 0 2921202..2922398 + 398 161986470 yfjD SSON_2769 - hypothetical protein 2585 50.17 0 2922453..2923046 - 197 74313203 grpE SSON_2770 - heat shock protein GrpE 2586 49.94 0 2923169..2924047 + 292 74313204 ppnK SSON_2771 - inorganic polyphosphate/ATP-NAD kinase 2587 51.74 0 2924133..2925794 + 553 74313205 recN SSON_2772 - recombination and repair protein 2588 49.71 0 2925943..2926284 + 113 161986469 smpA SSON_2773 - hypothetical protein 2589 49.07 0 2926343..2926666 - 107 74313207 - SSON_2774 - IS4 orf 2590 55.19 0 2927053..2927958 + 301 161986468 - SSON_2775 - insertion element IS2 transposase InsD 2591 54.86 0 2927883..2929025 - 380 74313209 - SSON_2776 - IS4 orf 2592 54.62 0 2929075..2930319 - 414 74313210 - SSON_2777 - putative portal protein 2593 60.66 +2 2930231..2930413 - 60 74313211 ymfR SSON_2778 - hypothetical protein 2594 54.21 0 2930425..2932158 - 577 74313212 ymfN SSON_2779 - hypothetical protein 2595 58.59 +1 2932155..2932649 - 164 74313213 - SSON_2780 - hypothetical protein 2596 57.55 +1 2932771..2933121 - 116 74313214 - SSON_2781 - putative DNase 2597 52.04 0 2933164..2933628 - 154 74313215 ybcT SSON_2782 - endopeptidase-like protein 2598 49.60 0 2933625..2934122 - 165 74313216 ybcS SSON_2783 - lysozyme-like protein 2599 48.61 0 2934122..2934337 - 71 74313217 - SSON_2784 - lysis protein S 2600 46.72 -1 2935518..2936279 - 253 74313218 - SSON_2789 - putative bacteriophage protein 2601 47.03 -1 2936562..2936948 - 128 74313219 - SSON_2790 - antitermination protein Q-like protein 2602 50.54 0 2936938..2937309 - 123 74313220 - SSON_2791 - putative endonuclease 2603 48.45 0 2937309..2937566 - 85 74313221 - SSON_2792 - putative bacteriophage protein 2604 52.64 0 2937563..2939095 - 510 74313222 - SSON_2793 - putative helicase 2605 55.08 0 2939070..2939975 - 301 161986467 - SSON_2794 - insertion element IS2 transposase InsD 2606 52.73 0 2939933..2940298 - 121 74313224 - SSON_2795 - insertion sequence 2 OrfA protein 2607 44.44 -1 2942092..2942235 - 47 74313225 - SSON_2797 - hypothetical protein 2608 34.42 -2 2942664..2944142 - 492 74313226 - SSON_2798 - hypothetical protein 2609 54.37 0 2944845..2945348 + 167 74313227 - SSON_2799 - IS1 ORF 2610 54.37 0 2945809..2946312 - 167 74313228 - SSON_2801 - IS1 ORF 2611 38.22 -2 2946772..2948325 + 517 74313229 - SSON_2802 - putative enzyme 2612 53.17 0 2948661..2949638 + 325 161986466 - SSON_2803 - hypothetical protein 2613 57.15 +1 2949592..2950926 + 444 74313231 ygaF SSON_2804 - hypothetical protein 2614 57.35 +1 2950949..2952397 + 482 74313232 gabD SSON_2805 - succinate-semialdehyde dehydrogenase I 2615 59.25 +1 2952411..2953691 + 426 74313233 gabT SSON_2806 - 4-aminobutyrate aminotransferase 2616 51.94 0 2954002..2955318 + 438 74313234 gabP SSON_2807 - transport permease protein of gamma-aminobutyrate 2617 53.39 0 2955339..2956001 + 220 161986465 ygaE SSON_2808 - DNA-binding transcriptional regulator CsiR 2618 48.22 0 2956002..2956451 - 149 74313236 ygaU SSON_2809 - hypothetical protein 2619 50.94 0 2956535..2956693 - 52 74313237 - SSON_2810 - hypothetical protein 2620 52.67 0 2956876..2957175 + 99 74313238 - SSON_2811 - hypothetical protein 2621 46.29 -1 2957185..2957709 + 174 74313239 ygaP SSON_2812 - hypothetical protein 2622 48.15 0 2957756..2958160 - 134 74313240 stpA SSON_2813 - DNA binding protein, nucleoid-associated 2623 57.73 +1 2958675..2959871 + 398 74313241 - SSON_2814 - ISSfl2 ORF 2624 48.67 0 2960280..2960729 + 149 74313242 - SSON_2815 - hypothetical protein 2625 46.09 -1 2960766..2961110 - 114 74313243 ygaC SSON_2816 - hypothetical protein 2626 53.51 0 2961250..2961591 + 113 74313244 ygaM SSON_2817 - hypothetical protein 2627 53.25 0 2961839..2962084 + 81 74313245 nrdH SSON_2818 - glutaredoxin-like protein 2628 52.35 0 2962464..2964608 + 714 74313246 nrdE SSON_2820 - ribonucleotide-diphosphate reductase subunit alpha 2629 48.12 0 2964618..2965577 + 319 74313247 nrdF SSON_2821 - ribonucleotide-diphosphate reductase subunit beta 2630 48.79 0 2965933..2967135 + 400 74313248 proV SSON_2822 - glycine betaine transporter ATP-binding subunit 2631 58.12 +1 2967128..2968192 + 354 74313249 proW SSON_2823 - glycine betaine transporter membrane protein 2632 52.27 0 2968250..2969242 + 330 74313250 proX SSON_2824 - glycine betaine transporter periplasmic subunit 2633 54.77 0 2969533..2970717 + 394 74313251 - SSON_2825 - permease 2634 52.57 0 2970841..2971578 + 245 74313252 - SSON_2826 - hypothetical protein 2635 55.36 0 2971568..2971903 + 111 74313253 ygaH SSON_2827 - hypothetical protein 2636 49.15 0 2971994..2972524 + 176 74313254 emrR SSON_2828 - transcriptional repressor MprA 2637 53.11 0 2972651..2973823 + 390 74313255 emrA SSON_2829 - multidrug resistance secretion protein 2638 56.47 +1 2973840..2975378 + 512 74313256 emrB SSON_2830 - membrane translocase 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0