IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2539	 46.20	-1	2885117..2885419	+	100	74313157	-	SSON_2724	-	IS600 ORF1
2540	 52.10	0	2885560..2886273	+	237	74313158	-	SSON_2725	-	IS600 ORF2
2541	 53.84	0	2886336..2887832	+	498	74313159	-	SSON_2726	-	putative sheath protein
2542	 51.54	0	2887832..2888188	+	118	74313160	-	SSON_2727	-	hypothetical protein
2543	 49.40	0	2888188..2888523	+	111	74313161	-	SSON_2728	-	hypothetical protein
2544	 52.05	0	2888608..2890557	+	649	74313162	-	SSON_2729	-	putative tail protein
2545	 54.37	0	2890984..2891487	+	167	74313163	-	SSON_2730	-	IS1 ORF
2546	 54.60	0	2891931..2893322	+	463	74313164	-	SSON_2731	-	tail/DNA circulation protein
2547	 54.39	0	2893319..2894401	+	360	74313165	-	SSON_2732	-	putative tail protein
2548	 53.18	0	2894379..2894912	+	177	74313166	-	SSON_2733	-	putative baseplate assembly protein
2549	 52.80	0	2894918..2895328	+	136	74313167	-	SSON_2734	-	putative tail protein
2550	 53.63	0	2895321..2895995	+	224	74313168	-	SSON_2735	-	putative head assembly protein
2551	 54.37	0	2895930..2896433	-	167	74313169	-	SSON_2736	-	IS1 ORF
2552	 53.94	0	2896788..2897180	+	130	74313170	-	SSON_2737	-	putative tail protein
2553	 52.62	0	2897180..2897770	+	196	74313171	-	SSON_2738	-	putative tail protein
2554	 49.09	0	2897757..2898797	+	346	74313172