IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2525	 52.03	0	2863087..2863776	+	229	74313143	ung	SSON_2706	-	uracil-DNA glycosylase
2526	 56.45	+1	2863824..2864861	-	345	74313144	yfiF	SSON_2707	-	putative methyltransferase
2527	 49.52	0	2865068..2865487	+	139	74313145	trxC	SSON_2708	-	thioredoxin 2
2528	 51.87	0	2865532..2866254	+	240	74313146	yfiP	SSON_2709	-	hypothetical protein
2529	 54.27	0	2866286..2868946	+	886	74313147	yfiQ	SSON_2710	-	hypothetical protein
2530	 48.86	0	2869057..2870415	+	452	74313148	pssA	SSON_2711	-	phosphatidylserine synthase
2531	 56.41	+1	2870512..2870784	+	90	74313149	yfiM	SSON_2712	-	hypothetical protein
2532	 48.88	0	2870781..2872079	-	432	74313150	kgtP	SSON_2713	-	alpha-ketoglutarate transporter
2533	 51.36	0	2877856..2880429	-	857	74313151	clpB	SSON_2718	-	protein disaggregation chaperone
2534	 53.83	0	2880559..2881290	-	243	74313152	yfiH	SSON_2719	-	hypothetical protein
2535	 52.91	0	2881287..2882267	-	326	74313153	rluD	SSON_2720	-	23S rRNA pseudouridine synthase D
2536	 50.68	0	2882402..2883139	+	245	74313154	-	SSON_2721	-	outer membrane protein assembly complex subunit YfiO
2537	 53.97	0	2883243..2884589	+	448	74313155	-	SSON_2722	-	IS4 orf
2538	 52.62	0	2884693..2885055	+	120	74313156	-	SSON_2723	-	putative prohead protease
2539	 46.20	-1	2885117..2885419	+	100	74313157	-	SSON_2724	-	IS600 ORF1
2540	 52.10	0	2885560..2886273	+	237