IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2521	 54.91	0	2859229..2860563	+	444	74313139	srmB	SSON_2702	-	ATP-dependent RNA helicase SrmB
2522	 48.65	0	2860772..2861698	-	308	74313140	yfiE	SSON_2703	-	putative transcriptional regulator LYSR-type
2523	 51.19	0	2861756..2862343	+	195	74313141	yfiK	SSON_2704	-	neutral amino-acid efflux protein
2524	 47.40	-1	2862399..2862782	-	127	74313142	yfiD	SSON_2705	-	autonomous glycyl radical cofactor GrcA
2525	 52.03	0	2863087..2863776	+	229	74313143	ung	SSON_2706	-	uracil-DNA glycosylase
2526	 56.45	+1	2863824..2864861	-	345	74313144	yfiF	SSON_2707	-	putative methyltransferase
2527	 49.52	0	2865068..2865487	+	139	74313145	trxC	SSON_2708	-	thioredoxin 2
2528	 51.87	0	2865532..2866254	+	240	74313146	yfiP	SSON_2709	-	hypothetical protein
2529	 54.27	0	2866286..2868946	+	886	74313147	yfiQ	SSON_2710	-	hypothetical protein
2530	 48.86	0	2869057..2870415	+	452	74313148	pssA	SSON_2711	-	phosphatidylserine synthase
2531	 56.41	+1	2870512..2870784	+	90	74313149	yfiM	SSON_2712	-	hypothetical protein
2532	 48.88	0	2870781..2872079	-	432	74313150	kgtP	SSON_2713	-	alpha-ketoglutarate transporter
2533	 51.36	0	2877856..2880429	-	857	74313151	clpB	SSON_2718	-	protein disaggregation chaperone
2534	 53.83	0	2880559..2881290	-	243	74313152	yfiH	SSON_2719	-	hypothetical protein
2535	 52.91	0	2881287..2882267	-	326	74313153	rluD	SSON_2720	-	23S rRNA pseudouridine synthase D
2536	 50.68	0	2882402..2883139	+	245