IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2515	 50.47	0	2852864..2853820	-	318	74313133	rseB	SSON_2695	-	periplasmic negative regulator of sigmaE
2516	 52.07	0	2853820..2854470	-	216	74313134	rseA	SSON_2696	-	anti-RNA polymerase sigma factor SigE
2517	 48.96	0	2854503..2855078	-	191	74313135	rpoE	SSON_2697	-	RNA polymerase sigma factor RpoE
2518	 46.53	-1	2856250..2856552	+	100	74313136	-	SSON_2699	-	IS600 ORF1
2519	 51.96	0	2856693..2857406	+	237	74313137	-	SSON_2700	-	IS600 ORF2
2520	 52.80	0	2858360..2859217	-	285	74313138	yfiC	SSON_2701	-	putative enzyme
2521	 54.91	0	2859229..2860563	+	444	74313139	srmB	SSON_2702	-	ATP-dependent RNA helicase SrmB
2522	 48.65	0	2860772..2861698	-	308	74313140	yfiE	SSON_2703	-	putative transcriptional regulator LYSR-type
2523	 51.19	0	2861756..2862343	+	195	74313141	yfiK	SSON_2704	-	neutral amino-acid efflux protein
2524	 47.40	-1	2862399..2862782	-	127	74313142	yfiD	SSON_2705	-	autonomous glycyl radical cofactor GrcA
2525	 52.03	0	2863087..2863776	+	229	74313143	ung	SSON_2706	-	uracil-DNA glycosylase
2526	 56.45	+1	2863824..2864861	-	345	74313144	yfiF	SSON_2707	-	putative methyltransferase
2527	 49.52	0	2865068..2865487	+	139	74313145	trxC	SSON_2708	-	thioredoxin 2
2528	 51.87	0	2865532..2866254	+	240	74313146	yfiP	SSON_2709	-	hypothetical protein
2529	 54.27	0	2866286..2868946	+	886	74313147	yfiQ	SSON_2710	-	hypothetical protein
2530	 48.86	0	2869057..2870415	+	452