IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2508	 55.33	0	2846063..2846794	-	243	74313126	pdxJ	SSON_2688	-	pyridoxal phosphate biosynthetic protein PdxJ
2509	 54.18	0	2846806..2847534	-	242	74313127	recO	SSON_2689	-	DNA repair protein RecO
2510	 51.99	0	2847546..2848451	-	301	74313128	era	SSON_2690	-	GTP-binding protein Era
2511	 50.66	0	2848448..2849128	-	226	74313129	rnc	SSON_2691	-	ribonuclease III
2512	 51.69	0	2849401..2850375	-	324	74313130	lepB	SSON_2692	-	lsignal peptidase I
2513	 53.56	0	2850391..2852190	-	599	74313131	lepA	SSON_2693	-	GTP-binding protein LepA
2514	 53.96	0	2852388..2852867	-	159	74313132	rseC	SSON_2694	-	SoxR reducing system protein RseC
2515	 50.47	0	2852864..2853820	-	318	74313133	rseB	SSON_2695	-	periplasmic negative regulator of sigmaE
2516	 52.07	0	2853820..2854470	-	216	74313134	rseA	SSON_2696	-	anti-RNA polymerase sigma factor SigE
2517	 48.96	0	2854503..2855078	-	191	74313135	rpoE	SSON_2697	-	RNA polymerase sigma factor RpoE
2518	 46.53	-1	2856250..2856552	+	100	74313136	-	SSON_2699	-	IS600 ORF1
2519	 51.96	0	2856693..2857406	+	237	74313137	-	SSON_2700	-	IS600 ORF2
2520	 52.80	0	2858360..2859217	-	285	74313138	yfiC	SSON_2701	-	putative enzyme
2521	 54.91	0	2859229..2860563	+	444	74313139	srmB	SSON_2702	-	ATP-dependent RNA helicase SrmB
2522	 48.65	0	2860772..2861698	-	308	74313140	yfiE	SSON_2703	-	putative transcriptional regulator LYSR-type
2523	 51.19	0	2861756..2862343	+	195