version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2503 53.20 0 2841854..2842150 + 98 74313121 - SSON_2683 - putative protein encoded within IS 2504 55.13 0 2842150..2843337 + 395 74313122 - SSON_2684 - IS91 orf 2505 51.04 0 2843510..2844712 - 400 74313123 - SSON_2685 - hypothetical protein 2506 44.06 -1 2844927..2845187 + 86 74313124 yfhL SSON_2686 - hypothetical protein 2507 50.39 0 2845683..2846063 - 126 74313125 acpS SSON_2687 - 4'-phosphopantetheinyl transferase 2508 55.33 0 2846063..2846794 - 243 74313126 pdxJ SSON_2688 - pyridoxal phosphate biosynthetic protein PdxJ 2509 54.18 0 2846806..2847534 - 242 74313127 recO SSON_2689 - DNA repair protein RecO 2510 51.99 0 2847546..2848451 - 301 74313128 era SSON_2690 - GTP-binding protein Era 2511 50.66 0 2848448..2849128 - 226 74313129 rnc SSON_2691 - ribonuclease III 2512 51.69 0 2849401..2850375 - 324 74313130 lepB SSON_2692 - lsignal peptidase I 2513 53.56 0 2850391..2852190 - 599 74313131 lepA SSON_2693 - GTP-binding protein LepA 2514 53.96 0 2852388..2852867 - 159 74313132 rseC SSON_2694 - SoxR reducing system protein RseC 2515 50.47 0 2852864..2853820 - 318 74313133 rseB SSON_2695 - periplasmic negative regulator of sigmaE 2516 52.07 0 2853820..2854470 - 216 74313134 rseA SSON_2696 - anti-RNA polymerase sigma factor SigE 2517 48.96 0 2854503..2855078 - 191 74313135 rpoE SSON_2697 - RNA polymerase sigma factor RpoE 2518 46.53 -1 2856250..2856552 + 100 74313136 - SSON_2699 - IS600 ORF1 2519 51.96 0 2856693..2857406 + 237 74313137 - SSON_2700 - IS600 ORF2 2520 52.80 0 2858360..2859217 - 285 74313138 yfiC SSON_2701 - putative enzyme 2521 54.91 0 2859229..2860563 + 444 74313139 srmB SSON_2702 - ATP-dependent RNA helicase SrmB 2522 48.65 0 2860772..2861698 - 308 74313140 yfiE SSON_2703 - putative transcriptional regulator LYSR-type 2523 51.19 0 2861756..2862343 + 195 74313141 yfiK SSON_2704 - neutral amino-acid efflux protein 2524 47.40 -1 2862399..2862782 - 127 74313142 yfiD SSON_2705 - autonomous glycyl radical cofactor GrcA 2525 52.03 0 2863087..2863776 + 229 74313143 ung SSON_2706 - uracil-DNA glycosylase 2526 56.45 +1 2863824..2864861 - 345 74313144 yfiF SSON_2707 - putative methyltransferase 2527 49.52 0 2865068..2865487 + 139 74313145 trxC SSON_2708 - thioredoxin 2 2528 51.87 0 2865532..2866254 + 240 74313146 yfiP SSON_2709 - hypothetical protein 2529 54.27 0 2866286..2868946 + 886 74313147 yfiQ SSON_2710 - hypothetical protein 2530 48.86 0 2869057..2870415 + 452 74313148 pssA SSON_2711 - phosphatidylserine synthase 2531 56.41 +1 2870512..2870784 + 90 74313149 yfiM SSON_2712 - hypothetical protein 2532 48.88 0 2870781..2872079 - 432 74313150 kgtP SSON_2713 - alpha-ketoglutarate transporter 2533 51.36 0 2877856..2880429 - 857 74313151 clpB SSON_2718 - protein disaggregation chaperone 2534 53.83 0 2880559..2881290 - 243 74313152 yfiH SSON_2719 - hypothetical protein 2535 52.91 0 2881287..2882267 - 326 74313153 rluD SSON_2720 - 23S rRNA pseudouridine synthase D 2536 50.68 0 2882402..2883139 + 245 74313154 - SSON_2721 - outer membrane protein assembly complex subunit YfiO 2537 53.97 0 2883243..2884589 + 448 74313155 - SSON_2722 - IS4 orf 2538 52.62 0 2884693..2885055 + 120 74313156 - SSON_2723 - putative prohead protease 2539 46.20 -1 2885117..2885419 + 100 74313157 - SSON_2724 - IS600 ORF1 2540 52.10 0 2885560..2886273 + 237 74313158 - SSON_2725 - IS600 ORF2 2541 53.84 0 2886336..2887832 + 498 74313159 - SSON_2726 - putative sheath protein 2542 51.54 0 2887832..2888188 + 118 74313160 - SSON_2727 - hypothetical protein 2543 49.40 0 2888188..2888523 + 111 74313161 - SSON_2728 - hypothetical protein 2544 52.05 0 2888608..2890557 + 649 74313162 - SSON_2729 - putative tail protein 2545 54.37 0 2890984..2891487 + 167 74313163 - SSON_2730 - IS1 ORF 2546 54.60 0 2891931..2893322 + 463 74313164 - SSON_2731 - tail/DNA circulation protein 2547 54.39 0 2893319..2894401 + 360 74313165 - SSON_2732 - putative tail protein 2548 53.18 0 2894379..2894912 + 177 74313166 - SSON_2733 - putative baseplate assembly protein 2549 52.80 0 2894918..2895328 + 136 74313167 - SSON_2734 - putative tail protein 2550 53.63 0 2895321..2895995 + 224 74313168 - SSON_2735 - putative head assembly protein 2551 54.37 0 2895930..2896433 - 167 74313169 - SSON_2736 - IS1 ORF 2552 53.94 0 2896788..2897180 + 130 74313170 - SSON_2737 - putative tail protein 2553 52.62 0 2897180..2897770 + 196 74313171 - SSON_2738 - putative tail protein 2554 49.09 0 2897757..2898797 + 346 74313172 - SSON_2739 - putative tail fiber protein 2555 52.27 0 2898950..2899345 + 131 74313173 - SSON_2740 - putative tail fiber assembly protein 2556 53.98 0 2899471..2900637 + 388 74313174 - SSON_2741 - putative tail fiber protein 2557 52.88 0 2900588..2901211 + 207 74313175 - SSON_2742 - hypothetical protein 2558 51.35 0 2901987..2902469 - 160 74313176 smpB SSON_2743 - SsrA-binding protein 2559 46.75 -1 2902601..2903077 + 158 74313177 - SSON_2744 - hypothetical protein 2560 50.86 0 2903067..2903357 + 96 161986472 - SSON_2745 - hypothetical protein 2561 53.90 0 2903451..2904797 + 448 74313179 - SSON_2746 - IS4 orf 2562 36.71 -2 2904817..2905023 + 68 74313180 - SSON_2747 - hypothetical protein 2563 45.91 -1 2905058..2905399 + 113 74313181 yfiA SSON_2748 - translation inhibitor protein RaiA 2564 39.58 -2 2905503..2905550 + 15 74313182 pheL SSON_2749 - leader peptide of chorismate mutase-P-prephenate dehydratase 2565 48.75 0 2905650..2906810 + 386 74313183 pheA SSON_2750 - bifunctional chorismate mutase/prephenate dehydratase 2566 52.14 0 2906853..2907974 - 373 74313184 tyrA SSON_2751 - bifunctional chorismate mutase/prephenate dehydrogenase 2567 51.73 0 2907985..2909055 - 356 74313185 aroF SSON_2752 - phospho-2-dehydro-3-deoxyheptonate aldolase 2568 47.09 -1 2909264..2909641 + 125 74313186 yfiL SSON_2753 - hypothetical protein 2569 54.37 0 2909869..2910372 + 167 74313187 - SSON_2754 - IS1 ORF 2570 45.66 -1 2910556..2911074 + 172 74313188 - SSON_2755 - hypothetical protein 2571 52.10 0 2911174..2911887 - 237 74313189 - SSON_2756 - IS600 ORF2 2572 46.20 -1 2912028..2912330 - 100 74313190 - SSON_2757 - IS600 ORF1 2573 50.00 0 2912382..2912585 - 67 74313191 - SSON_2758 - IS600 ORF1 2574 53.03 0 2912866..2914038 + 390 74313192 - SSON_2759 - IS21 ORF1 2575 52.63 0 2914038..2914835 + 265 74313193 - SSON_2760 - IS21 ORF2 2576 49.33 0 2914897..2915946 + 349 74313194 yfiN SSON_2761 - hypothetical protein 2577 50.72 0 2915962..2916444 + 160 74313195 yfiB SSON_2762 - putative outer membrane lipoprotein 2578 47.99 0 2916521..2916868 - 115 74313196 rplS SSON_2763 - 50S ribosomal protein L19 2579 53.26 0 2916910..2917677 - 255 74313197 trmD SSON_2764 - tRNA (guanine-N(1)-)-methyltransferase 2580 49.00 0 2917708..2918256 - 182 161986471 rimM SSON_2765 - 16S rRNA-processing protein 2581 51.41 0 2918275..2918523 - 82 74313199 rpsP SSON_2766 - 30S ribosomal protein S16 2582 54.48 0 2918772..2920133 - 453 74313200 ffh SSON_2767 - signal recognition particle protein 2583 52.25 0 2920225..2921091 + 288 74313201 - SSON_2768 - hypothetical protein 2584 51.63 0 2921202..2922398 + 398 161986470 yfjD SSON_2769 - hypothetical protein 2585 50.17 0 2922453..2923046 - 197 74313203 grpE SSON_2770 - heat shock protein GrpE 2586 49.94 0 2923169..2924047 + 292 74313204 ppnK SSON_2771 - inorganic polyphosphate/ATP-NAD kinase 2587 51.74 0 2924133..2925794 + 553 74313205 recN SSON_2772 - recombination and repair protein 2588 49.71 0 2925943..2926284 + 113 161986469 smpA SSON_2773 - hypothetical protein 2589 49.07 0 2926343..2926666 - 107 74313207 - SSON_2774 - IS4 orf 2590 55.19 0 2927053..2927958 + 301 161986468 - SSON_2775 - insertion element IS2 transposase InsD 2591 54.86 0 2927883..2929025 - 380 74313209 - SSON_2776 - IS4 orf 2592 54.62 0 2929075..2930319 - 414 74313210 - SSON_2777 - putative portal protein 2593 60.66 +2 2930231..2930413 - 60 74313211 ymfR SSON_2778 - hypothetical protein 2594 54.21 0 2930425..2932158 - 577 74313212 ymfN SSON_2779 - hypothetical protein 2595 58.59 +1 2932155..2932649 - 164 74313213 - SSON_2780 - hypothetical protein 2596 57.55 +1 2932771..2933121 - 116 74313214 - SSON_2781 - putative DNase 2597 52.04 0 2933164..2933628 - 154 74313215 ybcT SSON_2782 - endopeptidase-like protein 2598 49.60 0 2933625..2934122 - 165 74313216 ybcS SSON_2783 - lysozyme-like protein 2599 48.61 0 2934122..2934337 - 71 74313217 - SSON_2784 - lysis protein S 2600 46.72 -1 2935518..2936279 - 253 74313218 - SSON_2789 - putative bacteriophage protein 2601 47.03 -1 2936562..2936948 - 128 74313219 - SSON_2790 - antitermination protein Q-like protein 2602 50.54 0 2936938..2937309 - 123 74313220 - SSON_2791 - putative endonuclease 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0