IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2496	 54.64	0	2835968..2837239	-	423	74313114	-	SSON_2676	-	hypothetical protein
2497	 47.12	-1	2837424..2837735	-	103	74313115	traL	SSON_2677	-	conjugal transfer pilus assembly protein TraL
2498	 48.94	0	2837750..2838031	-	93	74313116	traA	SSON_2678	-	conjugal transfer pilin subunit TraA
2499	 54.17	0	2838146..2839033	-	295	74313117	-	SSON_2679	-	IS629 ORF2
2500	 54.43	0	2839033..2839359	-	108	74313118	-	SSON_2680	-	IS629 ORF1
2501	 52.63	0	2839740..2840537	-	265	74313119	-	SSON_2681	-	IS21 ORF2
2502	 52.94	0	2840537..2841709	-	390	74313120	-	SSON_2682	-	IS21 ORF1
2503	 53.20	0	2841854..2842150	+	98	74313121	-	SSON_2683	-	putative protein encoded within IS
2504	 55.13	0	2842150..2843337	+	395	74313122	-	SSON_2684	-	IS91 orf
2505	 51.04	0	2843510..2844712	-	400	74313123	-	SSON_2685	-	hypothetical protein
2506	 44.06	-1	2844927..2845187	+	86	74313124	yfhL	SSON_2686	-	hypothetical protein
2507	 50.39	0	2845683..2846063	-	126	74313125	acpS	SSON_2687	-	4'-phosphopantetheinyl transferase
2508	 55.33	0	2846063..2846794	-	243	74313126	pdxJ	SSON_2688	-	pyridoxal phosphate biosynthetic protein PdxJ
2509	 54.18	0	2846806..2847534	-	242	74313127	recO	SSON_2689	-	DNA repair protein RecO
2510	 51.99	0	2847546..2848451	-	301	74313128	era	SSON_2690	-	GTP-binding protein Era
2511	 50.66	0	2848448..2849128	-	226