IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2481	 55.08	0	2817646..2818551	+	301	161986473	-	SSON_2660	-	insertion element IS2 transposase InsD
2482	 53.44	0	2819082..2819648	+	188	74313100	-	SSON_2661	-	Rep protein
2483	 46.41	-1	2819939..2820856	+	305	74313101	cjrA	SSON_2662	-	putative iron-regulated protein
2484	 45.83	-1	2821089..2821640	+	183	74313102	cjrB	SSON_2663	-	colicin Js-sensitive putative membrane protein
2485	 48.45	0	2821809..2824070	+	753	74313103	cjrC	SSON_2664	-	colicin Js-sensitive receptor protein
2486	 45.83	-1	2824139..2825314	+	391	74313104	senB	SSON_2665	-	putative enterotoxin
2487	 59.63	+1	2826339..2827730	-	463	74313105	-	SSON_2666	-	putative protein encoded within IS
2488	 58.05	+1	2827927..2828274	-	115	74313106	-	SSON_2667	-	putative protein encoded within IS
2489	 54.37	0	2828986..2829489	+	167	74313107	-	SSON_2668	-	IS1 ORF
2490	 49.91	0	2829779..2830954	-	391	74313108	-	SSON_2669	-	putative transposase
2491	 45.87	-1	2831037..2831339	+	100	74313109	-	SSON_2670	-	IS600 ORF1
2492	 52.10	0	2831480..2832193	+	237	74313110	-	SSON_2671	-	IS600 ORF2
2493	 56.33	+1	2832902..2833462	-	186	74313111	finO	SSON_2672	-	conjugal transfer fertility inhibition protein FinO
2494	 61.68	+2	2834284..2835486	-	400	74313112	-	SSON_2674	-	hypothetical protein
2495	 56.07	+1	2835585..2835971	-	128	74313113	trbI	SSON_2675	-	conjugal transfer protein TrbI
2496	 54.64	0	2835968..2837239	-	423