IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2468	 53.21	0	2806974..2807597	-	207	74313086	-	SSON_2647	-	hypothetical protein
2469	 53.73	0	2807548..2808714	-	388	74313087	-	SSON_2648	-	putative tail fiber protein
2470	 55.56	0	2808774..2809232	-	152	74313088	-	SSON_2649	-	putative protein encoded within IS
2471	 58.05	+1	2809282..2809629	-	115	74313089	-	SSON_2650	-	putative protein encoded within IS
2472	 52.10	0	2809868..2810581	-	237	74313090	-	SSON_2651	-	IS600 ORF2
2473	 46.53	-1	2810722..2811024	-	100	74313091	-	SSON_2652	-	IS600 ORF1
2474	 49.47	0	2811621..2812748	-	375	74313092	-	SSON_2653	-	putative transposase
2475	 54.48	0	2813123..2813770	-	215	74313093	-	SSON_2654	-	IS629 ORF2
2476	 54.09	0	2813990..2814331	-	113	74313094	-	SSON_2655	-	IS629 ORF1
2477	 50.57	0	2814429..2814689	+	86	74313095	yfdA	SSON_2656	-	hypothetical protein
2478	 64.47	+2	2814686..2815276	+	196	74313096	-	SSON_2657	-	hypothetical protein
2479	 54.31	0	2815296..2815643	-	115	74313097	-	SSON_2658	-	hypothetical protein
2480	 35.13	-2	2815829..2816107	+	92	74313098	-	SSON_2659	-	putative immunity protein for colicin IA
2481	 55.08	0	2817646..2818551	+	301	161986473	-	SSON_2660	-	insertion element IS2 transposase InsD
2482	 53.44	0	2819082..2819648	+	188	74313100	-	SSON_2661	-	Rep protein
2483	 46.41	-1	2819939..2820856	+	305