IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2460	 54.20	0	2792767..2793480	-	237	74313078	yfhG	SSON_2638	-	hypothetical protein
2461	 52.58	0	2793645..2795135	-	496	74313079	yfhK	SSON_2639	-	putative 2-component sensor protein
2462	 57.00	+1	2795630..2799517	-	1295	74313080	purL	SSON_2640	-	phosphoribosylformylglycinamidine synthase
2463	 50.46	0	2799913..2801331	+	472	74313081	yfhD	SSON_2641	-	putative transglycosylase
2464	 54.38	0	2801328..2801864	-	178	74313082	yfhC	SSON_2642	-	tRNA-specific adenosine deaminase
2465	 52.36	0	2801889..2802524	-	211	161986475	yfhB	SSON_2643	-	hypothetical protein
2466	 51.83	0	2802733..2803581	+	282	161986474	yfhH	SSON_2644	-	putative DNA-binding transcriptional regulator
2467	 46.25	-1	2804968..2806794	+	608	74313085	ipaH_5	SSON_2646	-	invasion plasmid antigen
2468	 53.21	0	2806974..2807597	-	207	74313086	-	SSON_2647	-	hypothetical protein
2469	 53.73	0	2807548..2808714	-	388	74313087	-	SSON_2648	-	putative tail fiber protein
2470	 55.56	0	2808774..2809232	-	152	74313088	-	SSON_2649	-	putative protein encoded within IS
2471	 58.05	+1	2809282..2809629	-	115	74313089	-	SSON_2650	-	putative protein encoded within IS
2472	 52.10	0	2809868..2810581	-	237	74313090	-	SSON_2651	-	IS600 ORF2
2473	 46.53	-1	2810722..2811024	-	100	74313091	-	SSON_2652	-	IS600 ORF1
2474	 49.47	0	2811621..2812748	-	375	74313092	-	SSON_2653	-	putative transposase
2475	 54.48	0	2813123..2813770	-	215