IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2453	 55.66	0	2779805..2780803	-	332	74313071	yphD	SSON_2629	-	putative transport system permease protein
2454	 55.49	0	2780828..2782339	-	503	74313072	yphE	SSON_2630	-	putative ATP-binding component of a transport system
2455	 45.53	-1	2782362..2783345	-	327	74313073	yphF	SSON_2631	-	putative LACI-type transcriptional regulator
2456	 53.51	0	2788228..2789481	-	417	74313074	glyA	SSON_2634	-	serine hydroxymethyltransferase
2457	 52.56	0	2789809..2790999	+	396	74313075	hmpA	SSON_2635	-	nitric oxide dioxygenase
2458	 51.03	0	2791044..2791382	-	112	74313076	glnB	SSON_2636	-	nitrogen regulatory protein P-II 1
2459	 54.38	0	2791443..2792777	-	444	74313077	yfhA	SSON_2637	-	putative 2-component transcriptional regulator
2460	 54.20	0	2792767..2793480	-	237	74313078	yfhG	SSON_2638	-	hypothetical protein
2461	 52.58	0	2793645..2795135	-	496	74313079	yfhK	SSON_2639	-	putative 2-component sensor protein
2462	 57.00	+1	2795630..2799517	-	1295	74313080	purL	SSON_2640	-	phosphoribosylformylglycinamidine synthase
2463	 50.46	0	2799913..2801331	+	472	74313081	yfhD	SSON_2641	-	putative transglycosylase
2464	 54.38	0	2801328..2801864	-	178	74313082	yfhC	SSON_2642	-	tRNA-specific adenosine deaminase
2465	 52.36	0	2801889..2802524	-	211	161986475	yfhB	SSON_2643	-	hypothetical protein
2466	 51.83	0	2802733..2803581	+	282	161986474	yfhH	SSON_2644	-	putative DNA-binding transcriptional regulator
2467	 46.25	-1	2804968..2806794	+	608	74313085	ipa