version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2448 56.21 +1 2774417..2775229 + 270 74313066 hcaB SSON_2623 - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 2449 54.03 0 2775239..2776441 + 400 74313067 hcaD SSON_2624 - phenylpropionate dioxygenase ferredoxin reductase subunit 2450 54.37 0 2776812..2777315 + 167 74313068 - SSON_2625 - IS1 ORF 2451 54.98 0 2777794..2778666 - 290 74313069 yphB SSON_2627 - hypothetical protein 2452 54.61 0 2778678..2779772 - 364 74313070 yphC SSON_2628 - putative oxidoreductase 2453 55.66 0 2779805..2780803 - 332 74313071 yphD SSON_2629 - putative transport system permease protein 2454 55.49 0 2780828..2782339 - 503 74313072 yphE SSON_2630 - putative ATP-binding component of a transport system 2455 45.53 -1 2782362..2783345 - 327 74313073 yphF SSON_2631 - putative LACI-type transcriptional regulator 2456 53.51 0 2788228..2789481 - 417 74313074 glyA SSON_2634 - serine hydroxymethyltransferase 2457 52.56 0 2789809..2790999 + 396 74313075 hmpA SSON_2635 - nitric oxide dioxygenase 2458 51.03 0 2791044..2791382 - 112 74313076 glnB SSON_2636 - nitrogen regulatory protein P-II 1 2459 54.38 0 2791443..2792777 - 444 74313077 yfhA SSON_2637 - putative 2-component transcriptional regulator 2460 54.20 0 2792767..2793480 - 237 74313078 yfhG SSON_2638 - hypothetical protein 2461 52.58 0 2793645..2795135 - 496 74313079 yfhK SSON_2639 - putative 2-component sensor protein 2462 57.00 +1 2795630..2799517 - 1295 74313080 purL SSON_2640 - phosphoribosylformylglycinamidine synthase 2463 50.46 0 2799913..2801331 + 472 74313081 yfhD SSON_2641 - putative transglycosylase 2464 54.38 0 2801328..2801864 - 178 74313082 yfhC SSON_2642 - tRNA-specific adenosine deaminase 2465 52.36 0 2801889..2802524 - 211 161986475 yfhB SSON_2643 - hypothetical protein 2466 51.83 0 2802733..2803581 + 282 161986474 yfhH SSON_2644 - putative DNA-binding transcriptional regulator 2467 46.25 -1 2804968..2806794 + 608 74313085 ipaH_5 SSON_2646 - invasion plasmid antigen 2468 53.21 0 2806974..2807597 - 207 74313086 - SSON_2647 - hypothetical protein 2469 53.73 0 2807548..2808714 - 388 74313087 - SSON_2648 - putative tail fiber protein 2470 55.56 0 2808774..2809232 - 152 74313088 - SSON_2649 - putative protein encoded within IS 2471 58.05 +1 2809282..2809629 - 115 74313089 - SSON_2650 - putative protein encoded within IS 2472 52.10 0 2809868..2810581 - 237 74313090 - SSON_2651 - IS600 ORF2 2473 46.53 -1 2810722..2811024 - 100 74313091 - SSON_2652 - IS600 ORF1 2474 49.47 0 2811621..2812748 - 375 74313092 - SSON_2653 - putative transposase 2475 54.48 0 2813123..2813770 - 215 74313093 - SSON_2654 - IS629 ORF2 2476 54.09 0 2813990..2814331 - 113 74313094 - SSON_2655 - IS629 ORF1 2477 50.57 0 2814429..2814689 + 86 74313095 yfdA SSON_2656 - hypothetical protein 2478 64.47 +2 2814686..2815276 + 196 74313096 - SSON_2657 - hypothetical protein 2479 54.31 0 2815296..2815643 - 115 74313097 - SSON_2658 - hypothetical protein 2480 35.13 -2 2815829..2816107 + 92 74313098 - SSON_2659 - putative immunity protein for colicin IA 2481 55.08 0 2817646..2818551 + 301 161986473 - SSON_2660 - insertion element IS2 transposase InsD 2482 53.44 0 2819082..2819648 + 188 74313100 - SSON_2661 - Rep protein 2483 46.41 -1 2819939..2820856 + 305 74313101 cjrA SSON_2662 - putative iron-regulated protein 2484 45.83 -1 2821089..2821640 + 183 74313102 cjrB SSON_2663 - colicin Js-sensitive putative membrane protein 2485 48.45 0 2821809..2824070 + 753 74313103 cjrC SSON_2664 - colicin Js-sensitive receptor protein 2486 45.83 -1 2824139..2825314 + 391 74313104 senB SSON_2665 - putative enterotoxin 2487 59.63 +1 2826339..2827730 - 463 74313105 - SSON_2666 - putative protein encoded within IS 2488 58.05 +1 2827927..2828274 - 115 74313106 - SSON_2667 - putative protein encoded within IS 2489 54.37 0 2828986..2829489 + 167 74313107 - SSON_2668 - IS1 ORF 2490 49.91 0 2829779..2830954 - 391 74313108 - SSON_2669 - putative transposase 2491 45.87 -1 2831037..2831339 + 100 74313109 - SSON_2670 - IS600 ORF1 2492 52.10 0 2831480..2832193 + 237 74313110 - SSON_2671 - IS600 ORF2 2493 56.33 +1 2832902..2833462 - 186 74313111 finO SSON_2672 - conjugal transfer fertility inhibition protein FinO 2494 61.68 +2 2834284..2835486 - 400 74313112 - SSON_2674 - hypothetical protein 2495 56.07 +1 2835585..2835971 - 128 74313113 trbI SSON_2675 - conjugal transfer protein TrbI 2496 54.64 0 2835968..2837239 - 423 74313114 - SSON_2676 - hypothetical protein 2497 47.12 -1 2837424..2837735 - 103 74313115 traL SSON_2677 - conjugal transfer pilus assembly protein TraL 2498 48.94 0 2837750..2838031 - 93 74313116 traA SSON_2678 - conjugal transfer pilin subunit TraA 2499 54.17 0 2838146..2839033 - 295 74313117 - SSON_2679 - IS629 ORF2 2500 54.43 0 2839033..2839359 - 108 74313118 - SSON_2680 - IS629 ORF1 2501 52.63 0 2839740..2840537 - 265 74313119 - SSON_2681 - IS21 ORF2 2502 52.94 0 2840537..2841709 - 390 74313120 - SSON_2682 - IS21 ORF1 2503 53.20 0 2841854..2842150 + 98 74313121 - SSON_2683 - putative protein encoded within IS 2504 55.13 0 2842150..2843337 + 395 74313122 - SSON_2684 - IS91 orf 2505 51.04 0 2843510..2844712 - 400 74313123 - SSON_2685 - hypothetical protein 2506 44.06 -1 2844927..2845187 + 86 74313124 yfhL SSON_2686 - hypothetical protein 2507 50.39 0 2845683..2846063 - 126 74313125 acpS SSON_2687 - 4'-phosphopantetheinyl transferase 2508 55.33 0 2846063..2846794 - 243 74313126 pdxJ SSON_2688 - pyridoxal phosphate biosynthetic protein PdxJ 2509 54.18 0 2846806..2847534 - 242 74313127 recO SSON_2689 - DNA repair protein RecO 2510 51.99 0 2847546..2848451 - 301 74313128 era SSON_2690 - GTP-binding protein Era 2511 50.66 0 2848448..2849128 - 226 74313129 rnc SSON_2691 - ribonuclease III 2512 51.69 0 2849401..2850375 - 324 74313130 lepB SSON_2692 - lsignal peptidase I 2513 53.56 0 2850391..2852190 - 599 74313131 lepA SSON_2693 - GTP-binding protein LepA 2514 53.96 0 2852388..2852867 - 159 74313132 rseC SSON_2694 - SoxR reducing system protein RseC 2515 50.47 0 2852864..2853820 - 318 74313133 rseB SSON_2695 - periplasmic negative regulator of sigmaE 2516 52.07 0 2853820..2854470 - 216 74313134 rseA SSON_2696 - anti-RNA polymerase sigma factor SigE 2517 48.96 0 2854503..2855078 - 191 74313135 rpoE SSON_2697 - RNA polymerase sigma factor RpoE 2518 46.53 -1 2856250..2856552 + 100 74313136 - SSON_2699 - IS600 ORF1 2519 51.96 0 2856693..2857406 + 237 74313137 - SSON_2700 - IS600 ORF2 2520 52.80 0 2858360..2859217 - 285 74313138 yfiC SSON_2701 - putative enzyme 2521 54.91 0 2859229..2860563 + 444 74313139 srmB SSON_2702 - ATP-dependent RNA helicase SrmB 2522 48.65 0 2860772..2861698 - 308 74313140 yfiE SSON_2703 - putative transcriptional regulator LYSR-type 2523 51.19 0 2861756..2862343 + 195 74313141 yfiK SSON_2704 - neutral amino-acid efflux protein 2524 47.40 -1 2862399..2862782 - 127 74313142 yfiD SSON_2705 - autonomous glycyl radical cofactor GrcA 2525 52.03 0 2863087..2863776 + 229 74313143 ung SSON_2706 - uracil-DNA glycosylase 2526 56.45 +1 2863824..2864861 - 345 74313144 yfiF SSON_2707 - putative methyltransferase 2527 49.52 0 2865068..2865487 + 139 74313145 trxC SSON_2708 - thioredoxin 2 2528 51.87 0 2865532..2866254 + 240 74313146 yfiP SSON_2709 - hypothetical protein 2529 54.27 0 2866286..2868946 + 886 74313147 yfiQ SSON_2710 - hypothetical protein 2530 48.86 0 2869057..2870415 + 452 74313148 pssA SSON_2711 - phosphatidylserine synthase 2531 56.41 +1 2870512..2870784 + 90 74313149 yfiM SSON_2712 - hypothetical protein 2532 48.88 0 2870781..2872079 - 432 74313150 kgtP SSON_2713 - alpha-ketoglutarate transporter 2533 51.36 0 2877856..2880429 - 857 74313151 clpB SSON_2718 - protein disaggregation chaperone 2534 53.83 0 2880559..2881290 - 243 74313152 yfiH SSON_2719 - hypothetical protein 2535 52.91 0 2881287..2882267 - 326 74313153 rluD SSON_2720 - 23S rRNA pseudouridine synthase D 2536 50.68 0 2882402..2883139 + 245 74313154 - SSON_2721 - outer membrane protein assembly complex subunit YfiO 2537 53.97 0 2883243..2884589 + 448 74313155 - SSON_2722 - IS4 orf 2538 52.62 0 2884693..2885055 + 120 74313156 - SSON_2723 - putative prohead protease 2539 46.20 -1 2885117..2885419 + 100 74313157 - SSON_2724 - IS600 ORF1 2540 52.10 0 2885560..2886273 + 237 74313158 - SSON_2725 - IS600 ORF2 2541 53.84 0 2886336..2887832 + 498 74313159 - SSON_2726 - putative sheath protein 2542 51.54 0 2887832..2888188 + 118 74313160 - SSON_2727 - hypothetical protein 2543 49.40 0 2888188..2888523 + 111 74313161 - SSON_2728 - hypothetical protein 2544 52.05 0 2888608..2890557 + 649 74313162 - SSON_2729 - putative tail protein 2545 54.37 0 2890984..2891487 + 167 74313163 - SSON_2730 - IS1 ORF 2546 54.60 0 2891931..2893322 + 463 74313164 - SSON_2731 - tail/DNA circulation protein 2547 54.39 0 2893319..2894401 + 360 74313165 - SSON_2732 - putative tail protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0