IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2427	 57.07	+1	2748555..2750867	-	770	74313045	pbpC	SSON_2601	-	penicillin-binding protein 1C
2428	 53.02	0	2750868..2755829	-	1653	74313046	-	SSON_2602	-	hypothetical protein
2429	 53.07	0	2756036..2756881	+	281	161986479	sseA	SSON_2603	-	3-mercaptopyruvate sulfurtransferase
2430	 47.10	-1	2757374..2758150	-	258	161986478	sseB	SSON_2604	-	enhanced serine sensitivity protein SseB
2431	 56.39	+1	2758292..2759575	-	427	161986477	pepB	SSON_2605	-	aminopeptidase B
2432	 49.75	0	2759753..2759953	-	66	74313050	yfhJ	SSON_2606	-	hypothetical protein
2433	 50.89	0	2759965..2760300	-	111	74313051	fdx	SSON_2607	-	[2FE-2S] ferredoxin, electron carrer protein
2434	 57.75	+1	2760302..2762152	-	616	74313052	hscA	SSON_2608	-	chaperone protein HscA
2435	 51.94	0	2762169..2762684	-	171	74313053	hscB	SSON_2609	-	co-chaperone HscB
2436	 51.23	0	2762780..2763103	-	107	74313054	iscA	SSON_2610	-	iron-sulfur cluster assembly protein
2437	 49.61	0	2763120..2763506	-	128	74313055	-	SSON_2611	-	scaffold protein
2438	 52.87	0	2763534..2764772	-	412	74313056	yfhO	SSON_2612	-	putative aminotransferase
2439	 53.17	0	2764989..2765477	-	162	74313057	-	SSON_2613	-	DNA-binding transcriptional regulator IscR
2440	 54.74	0	2765778..2766515	-	245	74313058	-	SSON_2614	-	putative ATP synthase beta subunit
2441	 54.23	0	2766634..2767437	+	267	74313059	suhB	SSON_2615	-	inositol monophosphatase
2442	 49.55	0	2767555..2768436	+	293