IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2416	 54.46	0	2736147..2737613	-	488	74313034	guaB	SSON_2590	-	inositol-5-monophosphate dehydrogenase
2417	 53.32	0	2737775..2739145	+	456	74313035	xseA	SSON_2591	-	exodeoxyribonuclease VII large subunit
2418	 48.10	0	2739142..2739378	-	78	74313036	-	SSON_2592	-	hypothetical protein
2419	 51.80	0	2739426..2740898	-	490	161986480	engA	SSON_2593	-	GTP-binding protein EngA
2420	 53.18	0	2741016..2742194	-	392	74313038	-	SSON_2594	-	outer membrane protein assembly complex subunit YfgL
2421	 49.28	0	2742205..2742825	-	206	74313039	-	SSON_2595	-	hypothetical protein
2422	 54.51	0	2742843..2744117	-	424	74313040	hisS	SSON_2596	-	histidyl-tRNA synthetase
2423	 53.44	0	2744228..2745346	-	372	74313041	ispG	SSON_2597	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2424	 54.24	0	2745373..2746386	-	337	74313042	yfgA	SSON_2598	-	hypothetical protein
2425	 53.16	0	2746671..2747825	-	384	74313043	yfgB	SSON_2599	-	hypothetical protein
2426	 53.01	0	2747975..2748406	-	143	74313044	ndk	SSON_2600	-	nucleoside diphosphate kinase
2427	 57.07	+1	2748555..2750867	-	770	74313045	pbpC	SSON_2601	-	penicillin-binding protein 1C
2428	 53.02	0	2750868..2755829	-	1653	74313046	-	SSON_2602	-	hypothetical protein
2429	 53.07	0	2756036..2756881	+	281	161986479	sseA	SSON_2603	-	3-mercaptopyruvate sulfurtransferase
2430	 47.10	-1	2757374..2758150	-	258	161986478	sseB	SSON_2604	-	enhanced serine sensitivity protein SseB
2431	 56.39	+1	2758292..275957