IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2405	 52.02	0	2722413..2723702	-	429	74313023	uraA	SSON_2579	-	uracil transporter
2406	 53.27	0	2723788..2724414	-	208	161986481	upp	SSON_2580	-	uracil phosphoribosyltransferase
2407	 53.18	0	2724739..2725776	+	345	74313025	purM	SSON_2581	-	phosphoribosylaminoimidazole synthetase
2408	 53.21	0	2725776..2726414	+	212	74313026	purN	SSON_2582	-	phosphoribosylglycinamide formyltransferase
2409	 48.57	0	2726585..2728651	+	688	74313027	ppk	SSON_2583	-	polyphosphate kinase
2410	 51.49	0	2728656..2730197	+	513	74313028	ppx	SSON_2584	-	exopolyphosphatase
2411	 46.52	-1	2730236..2732479	-	747	74313029	-	SSON_2585	-	putative cytochrome C-type biogenesis protein
2412	 49.48	0	2732831..2733022	+	63	74313030	-	SSON_2586	-	hypothetical protein
2413	 47.01	-1	2733333..2733851	+	172	74313031	-	SSON_2587	-	putative outer membrane lipoprotein
2414	 49.07	0	2733867..2734406	+	179	74313032	-	SSON_2588	-	hypothetical protein
2415	 54.25	0	2734501..2736078	-	525	74313033	guaA	SSON_2589	-	bifunctional GMP synthase/glutamine amidotransferase protein
2416	 54.46	0	2736147..2737613	-	488	74313034	guaB	SSON_2590	-	inositol-5-monophosphate dehydrogenase
2417	 53.32	0	2737775..2739145	+	456	74313035	xseA	SSON_2591	-	exodeoxyribonuclease VII large subunit
2418	 48.10	0	2739142..2739378	-	78	74313036	-	SSON_2592	-	hypothetical protein
2419	 51.80	0	2739426..2740898	-	490	161986480	engA	SSON_2593	-	GTP-binding protein EngA
2420	 53.18	0	2741016..2742194