version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2402 54.03 0 2719636..2721099 + 487 74313020 - SSON_2576 - hypothetical protein 2403 52.22 0 2721120..2721479 + 119 74313021 - SSON_2577 - putative oxidoreductase 2404 52.88 0 2721617..2722363 - 248 74313022 - SSON_2578 - DNA replication initiation factor 2405 52.02 0 2722413..2723702 - 429 74313023 uraA SSON_2579 - uracil transporter 2406 53.27 0 2723788..2724414 - 208 161986481 upp SSON_2580 - uracil phosphoribosyltransferase 2407 53.18 0 2724739..2725776 + 345 74313025 purM SSON_2581 - phosphoribosylaminoimidazole synthetase 2408 53.21 0 2725776..2726414 + 212 74313026 purN SSON_2582 - phosphoribosylglycinamide formyltransferase 2409 48.57 0 2726585..2728651 + 688 74313027 ppk SSON_2583 - polyphosphate kinase 2410 51.49 0 2728656..2730197 + 513 74313028 ppx SSON_2584 - exopolyphosphatase 2411 46.52 -1 2730236..2732479 - 747 74313029 - SSON_2585 - putative cytochrome C-type biogenesis protein 2412 49.48 0 2732831..2733022 + 63 74313030 - SSON_2586 - hypothetical protein 2413 47.01 -1 2733333..2733851 + 172 74313031 - SSON_2587 - putative outer membrane lipoprotein 2414 49.07 0 2733867..2734406 + 179 74313032 - SSON_2588 - hypothetical protein 2415 54.25 0 2734501..2736078 - 525 74313033 guaA SSON_2589 - bifunctional GMP synthase/glutamine amidotransferase protein 2416 54.46 0 2736147..2737613 - 488 74313034 guaB SSON_2590 - inositol-5-monophosphate dehydrogenase 2417 53.32 0 2737775..2739145 + 456 74313035 xseA SSON_2591 - exodeoxyribonuclease VII large subunit 2418 48.10 0 2739142..2739378 - 78 74313036 - SSON_2592 - hypothetical protein 2419 51.80 0 2739426..2740898 - 490 161986480 engA SSON_2593 - GTP-binding protein EngA 2420 53.18 0 2741016..2742194 - 392 74313038 - SSON_2594 - outer membrane protein assembly complex subunit YfgL 2421 49.28 0 2742205..2742825 - 206 74313039 - SSON_2595 - hypothetical protein 2422 54.51 0 2742843..2744117 - 424 74313040 hisS SSON_2596 - histidyl-tRNA synthetase 2423 53.44 0 2744228..2745346 - 372 74313041 ispG SSON_2597 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2424 54.24 0 2745373..2746386 - 337 74313042 yfgA SSON_2598 - hypothetical protein 2425 53.16 0 2746671..2747825 - 384 74313043 yfgB SSON_2599 - hypothetical protein 2426 53.01 0 2747975..2748406 - 143 74313044 ndk SSON_2600 - nucleoside diphosphate kinase 2427 57.07 +1 2748555..2750867 - 770 74313045 pbpC SSON_2601 - penicillin-binding protein 1C 2428 53.02 0 2750868..2755829 - 1653 74313046 - SSON_2602 - hypothetical protein 2429 53.07 0 2756036..2756881 + 281 161986479 sseA SSON_2603 - 3-mercaptopyruvate sulfurtransferase 2430 47.10 -1 2757374..2758150 - 258 161986478 sseB SSON_2604 - enhanced serine sensitivity protein SseB 2431 56.39 +1 2758292..2759575 - 427 161986477 pepB SSON_2605 - aminopeptidase B 2432 49.75 0 2759753..2759953 - 66 74313050 yfhJ SSON_2606 - hypothetical protein 2433 50.89 0 2759965..2760300 - 111 74313051 fdx SSON_2607 - [2FE-2S] ferredoxin, electron carrer protein 2434 57.75 +1 2760302..2762152 - 616 74313052 hscA SSON_2608 - chaperone protein HscA 2435 51.94 0 2762169..2762684 - 171 74313053 hscB SSON_2609 - co-chaperone HscB 2436 51.23 0 2762780..2763103 - 107 74313054 iscA SSON_2610 - iron-sulfur cluster assembly protein 2437 49.61 0 2763120..2763506 - 128 74313055 - SSON_2611 - scaffold protein 2438 52.87 0 2763534..2764772 - 412 74313056 yfhO SSON_2612 - putative aminotransferase 2439 53.17 0 2764989..2765477 - 162 74313057 - SSON_2613 - DNA-binding transcriptional regulator IscR 2440 54.74 0 2765778..2766515 - 245 74313058 - SSON_2614 - putative ATP synthase beta subunit 2441 54.23 0 2766634..2767437 + 267 74313059 suhB SSON_2615 - inositol monophosphatase 2442 49.55 0 2767555..2768436 + 293 74313060 - SSON_2616 - putative enzyme 2443 51.52 0 2768627..2769907 + 426 161986476 csiE SSON_2617 - stationary phase inducible protein CsiE 2444 56.40 +1 2769899..2771038 - 379 74313062 hcaT SSON_2618 - putative 3-phenylpropionic acid transporter 2445 52.72 0 2772224..2773585 + 453 74313063 hcaA1 SSON_2620 - large terminal subunit of phenylpropionate dioxygenase 2446 51.83 0 2773582..2774100 + 172 74313064 hcaA2 SSON_2621 - 3-phenylpropionate dioxygenase subunit beta 2447 55.76 0 2774100..2774420 + 106 74313065 hcaC SSON_2622 - 3-phenylpropionate dioxygenase ferredoxin subunit 2448 56.21 +1 2774417..2775229 + 270 74313066 hcaB SSON_2623 - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 2449 54.03 0 2775239..2776441 + 400 74313067 hcaD SSON_2624 - phenylpropionate dioxygenase ferredoxin reductase subunit 2450 54.37 0 2776812..2777315 + 167 74313068 - SSON_2625 - IS1 ORF 2451 54.98 0 2777794..2778666 - 290 74313069 yphB SSON_2627 - hypothetical protein 2452 54.61 0 2778678..2779772 - 364 74313070 yphC SSON_2628 - putative oxidoreductase 2453 55.66 0 2779805..2780803 - 332 74313071 yphD SSON_2629 - putative transport system permease protein 2454 55.49 0 2780828..2782339 - 503 74313072 yphE SSON_2630 - putative ATP-binding component of a transport system 2455 45.53 -1 2782362..2783345 - 327 74313073 yphF SSON_2631 - putative LACI-type transcriptional regulator 2456 53.51 0 2788228..2789481 - 417 74313074 glyA SSON_2634 - serine hydroxymethyltransferase 2457 52.56 0 2789809..2790999 + 396 74313075 hmpA SSON_2635 - nitric oxide dioxygenase 2458 51.03 0 2791044..2791382 - 112 74313076 glnB SSON_2636 - nitrogen regulatory protein P-II 1 2459 54.38 0 2791443..2792777 - 444 74313077 yfhA SSON_2637 - putative 2-component transcriptional regulator 2460 54.20 0 2792767..2793480 - 237 74313078 yfhG SSON_2638 - hypothetical protein 2461 52.58 0 2793645..2795135 - 496 74313079 yfhK SSON_2639 - putative 2-component sensor protein 2462 57.00 +1 2795630..2799517 - 1295 74313080 purL SSON_2640 - phosphoribosylformylglycinamidine synthase 2463 50.46 0 2799913..2801331 + 472 74313081 yfhD SSON_2641 - putative transglycosylase 2464 54.38 0 2801328..2801864 - 178 74313082 yfhC SSON_2642 - tRNA-specific adenosine deaminase 2465 52.36 0 2801889..2802524 - 211 161986475 yfhB SSON_2643 - hypothetical protein 2466 51.83 0 2802733..2803581 + 282 161986474 yfhH SSON_2644 - putative DNA-binding transcriptional regulator 2467 46.25 -1 2804968..2806794 + 608 74313085 ipaH_5 SSON_2646 - invasion plasmid antigen 2468 53.21 0 2806974..2807597 - 207 74313086 - SSON_2647 - hypothetical protein 2469 53.73 0 2807548..2808714 - 388 74313087 - SSON_2648 - putative tail fiber protein 2470 55.56 0 2808774..2809232 - 152 74313088 - SSON_2649 - putative protein encoded within IS 2471 58.05 +1 2809282..2809629 - 115 74313089 - SSON_2650 - putative protein encoded within IS 2472 52.10 0 2809868..2810581 - 237 74313090 - SSON_2651 - IS600 ORF2 2473 46.53 -1 2810722..2811024 - 100 74313091 - SSON_2652 - IS600 ORF1 2474 49.47 0 2811621..2812748 - 375 74313092 - SSON_2653 - putative transposase 2475 54.48 0 2813123..2813770 - 215 74313093 - SSON_2654 - IS629 ORF2 2476 54.09 0 2813990..2814331 - 113 74313094 - SSON_2655 - IS629 ORF1 2477 50.57 0 2814429..2814689 + 86 74313095 yfdA SSON_2656 - hypothetical protein 2478 64.47 +2 2814686..2815276 + 196 74313096 - SSON_2657 - hypothetical protein 2479 54.31 0 2815296..2815643 - 115 74313097 - SSON_2658 - hypothetical protein 2480 35.13 -2 2815829..2816107 + 92 74313098 - SSON_2659 - putative immunity protein for colicin IA 2481 55.08 0 2817646..2818551 + 301 161986473 - SSON_2660 - insertion element IS2 transposase InsD 2482 53.44 0 2819082..2819648 + 188 74313100 - SSON_2661 - Rep protein 2483 46.41 -1 2819939..2820856 + 305 74313101 cjrA SSON_2662 - putative iron-regulated protein 2484 45.83 -1 2821089..2821640 + 183 74313102 cjrB SSON_2663 - colicin Js-sensitive putative membrane protein 2485 48.45 0 2821809..2824070 + 753 74313103 cjrC SSON_2664 - colicin Js-sensitive receptor protein 2486 45.83 -1 2824139..2825314 + 391 74313104 senB SSON_2665 - putative enterotoxin 2487 59.63 +1 2826339..2827730 - 463 74313105 - SSON_2666 - putative protein encoded within IS 2488 58.05 +1 2827927..2828274 - 115 74313106 - SSON_2667 - putative protein encoded within IS 2489 54.37 0 2828986..2829489 + 167 74313107 - SSON_2668 - IS1 ORF 2490 49.91 0 2829779..2830954 - 391 74313108 - SSON_2669 - putative transposase 2491 45.87 -1 2831037..2831339 + 100 74313109 - SSON_2670 - IS600 ORF1 2492 52.10 0 2831480..2832193 + 237 74313110 - SSON_2671 - IS600 ORF2 2493 56.33 +1 2832902..2833462 - 186 74313111 finO SSON_2672 - conjugal transfer fertility inhibition protein FinO 2494 61.68 +2 2834284..2835486 - 400 74313112 - SSON_2674 - hypothetical protein 2495 56.07 +1 2835585..2835971 - 128 74313113 trbI SSON_2675 - conjugal transfer protein TrbI 2496 54.64 0 2835968..2837239 - 423 74313114 - SSON_2676 - hypothetical protein 2497 47.12 -1 2837424..2837735 - 103 74313115 traL SSON_2677 - conjugal transfer pilus assembly protein TraL 2498 48.94 0 2837750..2838031 - 93 74313116 traA SSON_2678 - conjugal transfer pilin subunit TraA 2499 54.17 0 2838146..2839033 - 295 74313117 - SSON_2679 - IS629 ORF2 2500 54.43 0 2839033..2839359 - 108 74313118 - SSON_2680 - IS629 ORF1 2501 52.63 0 2839740..2840537 - 265 74313119 - SSON_2681 - IS21 ORF2 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0