IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2399	 52.76	0	2714015..2716006	+	663	74313017	hyfR	SSON_2572	-	putative 2-component regulator, interaction with sigma 54
2400	 57.81	+1	2716935..2718131	+	398	74313018	-	SSON_2574	-	ISSfl2 ORF
2401	 53.58	0	2718362..2719423	-	353	74313019	perM	SSON_2575	-	putative permease
2402	 54.03	0	2719636..2721099	+	487	74313020	-	SSON_2576	-	hypothetical protein
2403	 52.22	0	2721120..2721479	+	119	74313021	-	SSON_2577	-	putative oxidoreductase
2404	 52.88	0	2721617..2722363	-	248	74313022	-	SSON_2578	-	DNA replication initiation factor
2405	 52.02	0	2722413..2723702	-	429	74313023	uraA	SSON_2579	-	uracil transporter
2406	 53.27	0	2723788..2724414	-	208	161986481	upp	SSON_2580	-	uracil phosphoribosyltransferase
2407	 53.18	0	2724739..2725776	+	345	74313025	purM	SSON_2581	-	phosphoribosylaminoimidazole synthetase
2408	 53.21	0	2725776..2726414	+	212	74313026	purN	SSON_2582	-	phosphoribosylglycinamide formyltransferase
2409	 48.57	0	2726585..2728651	+	688	74313027	ppk	SSON_2583	-	polyphosphate kinase
2410	 51.49	0	2728656..2730197	+	513	74313028	ppx	SSON_2584	-	exopolyphosphatase
2411	 46.52	-1	2730236..2732479	-	747	74313029	-	SSON_2585	-	putative cytochrome C-type biogenesis protein
2412	 49.48	0	2732831..2733022	+	63	74313030	-	SSON_2586	-	hypothetical protein
2413	 47.01	-1	2733333..2733851	+	172	74313031	-	SSON_2587	-	putative outer membrane lipoprotein
2414	 49.07	0	2733867..2734406	+	179