IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2388	 49.47	0	2702531..2703001	+	156	74313006	bcp	SSON_2561	-	thioredoxin-dependent thiol peroxidase
2389	 56.32	+1	2703215..2703871	+	218	74313007	hyfA	SSON_2562	-	hydrogenase 4 Fe-S subunit
2390	 55.03	0	2703871..2705889	+	672	74313008	hyfB	SSON_2563	-	hydrogenase 4 subunit B
2391	 53.87	0	2705879..2706847	+	322	74313009	hyfC	SSON_2564	-	hydrogenase 4 membrane subunit
2392	 55.20	0	2706986..2708302	+	438	74313010	hyfD	SSON_2565	-	hydrogenase 4 subunit D
2393	 53.46	0	2708314..2708964	+	216	74313011	hyfE	SSON_2566	-	hydrogenase 4 membrane subunit
2394	 54.08	0	2708969..2710549	+	526	74313012	hyfF	SSON_2567	-	hydrogenase 4 subunit F
2395	 54.25	0	2710539..2712254	+	571	74313013	hyfG	SSON_2568	-	hydrogenase 4 subunit
2396	 55.56	0	2712264..2712803	+	179	74313014	hyfH	SSON_2569	-	hydrogenase 4 subunit H
2397	 55.99	+1	2712800..2713558	+	252	74313015	hyfI	SSON_2570	-	hydrogenase 4 Fe-S subunit
2398	 52.62	0	2713488..2713964	+	158	74313016	-	SSON_2571	-	putative protein processing element
2399	 52.76	0	2714015..2716006	+	663	74313017	hyfR	SSON_2572	-	putative 2-component regulator, interaction with sigma 54
2400	 57.81	+1	2716935..2718131	+	398	74313018	-	SSON_2574	-	ISSfl2 ORF
2401	 53.58	0	2718362..2719423	-	353	74313019	perM	SSON_2575	-	putative permease
2402	 54.03	0	2719636..2721099	+	487	74313020	-	SSON_2576	-	hypothetical protein
2403	 52.22	0	2721120..2721479	+	119