IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2377	 54.37	0	2689662..2692775	+	1037	74312995	acrD	SSON_2550	-	aminoglycoside/multidrug efflux system
2378	 47.34	-1	2693315..2693671	+	118	74312996	yffB	SSON_2551	-	hypothetical protein
2379	 53.28	0	2693675..2694802	+	375	74312997	dapE	SSON_2552	-	succinyl-diaminopimelate desuccinylase
2380	 48.44	0	2694806..2695030	+	74	74312998	-	SSON_2553	-	hypothetical protein
2381	 53.93	0	2695140..2695838	-	232	161986483	ypfH	SSON_2554	-	esterase YpfH
2382	 55.75	0	2695912..2697927	-	671	74313000	ypfI	SSON_2555	-	hypothetical protein
2383	 53.24	0	2697942..2698790	-	282	74313001	-	SSON_2556	-	hypothetical protein
2384	 52.24	0	2698958..2699671	-	237	74313002	purC	SSON_2557	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2385	 55.30	0	2699884..2700921	-	345	74313003	nlpB	SSON_2558	-	lipoprotein
2386	 51.76	0	2700935..2701813	-	292	74313004	dapA	SSON_2559	-	dihydrodipicolinate synthase
2387	 50.26	0	2701959..2702531	+	190	161986482	gcvR	SSON_2560	-	glycine cleavage system transcriptional repressor
2388	 49.47	0	2702531..2703001	+	156	74313006	bcp	SSON_2561	-	thioredoxin-dependent thiol peroxidase
2389	 56.32	+1	2703215..2703871	+	218	74313007	hyfA	SSON_2562	-	hydrogenase 4 Fe-S subunit
2390	 55.03	0	2703871..2705889	+	672	74313008	hyfB	SSON_2563	-	hydrogenase 4 subunit B
2391	 53.87	0	2705879..2706847	+	322	74313009	hyfC	SSON_2564	-	hydrogenase 4 membrane subunit
2392	 55.20	0	2706986..2708302	+	438