IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2375	 55.66	0	2685613..2687592	-	659	74312993	yffG	SSON_2548	-	putative oxidoreductase Fe-S binding subunit
2376	 51.62	0	2687798..2689498	+	566	74312994	narQ	SSON_2549	-	nitrate/nitrite sensor protein NarQ
2377	 54.37	0	2689662..2692775	+	1037	74312995	acrD	SSON_2550	-	aminoglycoside/multidrug efflux system
2378	 47.34	-1	2693315..2693671	+	118	74312996	yffB	SSON_2551	-	hypothetical protein
2379	 53.28	0	2693675..2694802	+	375	74312997	dapE	SSON_2552	-	succinyl-diaminopimelate desuccinylase
2380	 48.44	0	2694806..2695030	+	74	74312998	-	SSON_2553	-	hypothetical protein
2381	 53.93	0	2695140..2695838	-	232	161986483	ypfH	SSON_2554	-	esterase YpfH
2382	 55.75	0	2695912..2697927	-	671	74313000	ypfI	SSON_2555	-	hypothetical protein
2383	 53.24	0	2697942..2698790	-	282	74313001	-	SSON_2556	-	hypothetical protein
2384	 52.24	0	2698958..2699671	-	237	74313002	purC	SSON_2557	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2385	 55.30	0	2699884..2700921	-	345	74313003	nlpB	SSON_2558	-	lipoprotein
2386	 51.76	0	2700935..2701813	-	292	74313004	dapA	SSON_2559	-	dihydrodipicolinate synthase
2387	 50.26	0	2701959..2702531	+	190	161986482	gcvR	SSON_2560	-	glycine cleavage system transcriptional repressor
2388	 49.47	0	2702531..2703001	+	156	74313006	bcp	SSON_2561	-	thioredoxin-dependent thiol peroxidase
2389	 56.32	+1	2703215..2703871	+	218	74313007	hyfA	SSON_2562	-	hydrogenase 4 Fe-S subunit
2390	 55.03	0	2703871..2705889	+