IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2366	 58.83	+1	2675568..2676371	-	267	74312984	-	SSON_2539	-	hypothetical protein
2367	 55.56	0	2676368..2677069	-	233	74312985	-	SSON_2540	-	hypothetical protein
2368	 49.79	0	2677044..2677523	-	159	74312986	-	SSON_2541	-	hypothetical protein
2369	 48.53	0	2677536..2677943	-	135	74312987	-	SSON_2542	-	hypothetical protein
2370	 54.39	0	2678164..2680443	-	759	74312988	-	SSON_2543	-	malic enzyme
2371	 50.37	0	2680732..2681682	+	316	74312989	talA	SSON_2544	-	transaldolase A
2372	 54.74	0	2681702..2683705	+	667	74312990	tktB	SSON_2545	-	transketolase
2373	 55.08	0	2683801..2684844	-	347	74312991	-	SSON_2546	-	hypothetical protein
2374	 48.09	0	2684970..2685545	-	191	74312992	yffH	SSON_2547	-	hypothetical protein
2375	 55.66	0	2685613..2687592	-	659	74312993	yffG	SSON_2548	-	putative oxidoreductase Fe-S binding subunit
2376	 51.62	0	2687798..2689498	+	566	74312994	narQ	SSON_2549	-	nitrate/nitrite sensor protein NarQ
2377	 54.37	0	2689662..2692775	+	1037	74312995	acrD	SSON_2550	-	aminoglycoside/multidrug efflux system
2378	 47.34	-1	2693315..2693671	+	118	74312996	yffB	SSON_2551	-	hypothetical protein
2379	 53.28	0	2693675..2694802	+	375	74312997	dapE	SSON_2552	-	succinyl-diaminopimelate desuccinylase
2380	 48.44	0	2694806..2695030	+	74	74312998	-	SSON_2553	-	hypothetical protein
2381	 53.93	0	2695140..2695838	-	232